Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   J3Q19_RS07030 Genome accession   NZ_CP071581
Coordinates   1394279..1394887 (-) Length   202 a.a.
NCBI ID   WP_052802773.1    Uniprot ID   A0A5T1E6F1
Organism   Campylobacter jejuni strain R31     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1389279..1399887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q19_RS07005 (J3Q19_07005) - 1389436..1390200 (+) 765 WP_052802770.1 TIGR02757 family protein -
  J3Q19_RS07010 (J3Q19_07010) - 1390204..1390968 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q19_RS07015 (J3Q19_07015) ctsF 1390961..1392142 (-) 1182 WP_052802771.1 type II secretion system F family protein Machinery gene
  J3Q19_RS07020 (J3Q19_07020) ctsE 1392139..1393698 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  J3Q19_RS07025 (J3Q19_07025) ctsX 1393688..1394275 (-) 588 WP_052802772.1 transformation system protein Machinery gene
  J3Q19_RS07030 (J3Q19_07030) ctsP 1394279..1394887 (-) 609 WP_052802773.1 ATP-binding protein Machinery gene
  J3Q19_RS07035 (J3Q19_07035) ctsD 1394880..1396292 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q19_RS07040 (J3Q19_07040) ctsR 1396270..1396581 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23715.71 Da        Isoelectric Point: 9.9169

>NTDB_id=546544 J3Q19_RS07030 WP_052802773.1 1394279..1394887(-) (ctsP) [Campylobacter jejuni strain R31]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDTNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=546544 J3Q19_RS07030 WP_052802773.1 1394279..1394887(-) (ctsP) [Campylobacter jejuni strain R31]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATACAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1E6F1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99