Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LOZ89_RS18250 Genome accession   NZ_CP087594
Coordinates   3814390..3815655 (-) Length   421 a.a.
NCBI ID   WP_030423586.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SHOU-Ab01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3809390..3820655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ89_RS18220 (LOZ89_18220) pncA 3809611..3810255 (-) 645 WP_005127819.1 bifunctional nicotinamidase/pyrazinamidase -
  LOZ89_RS18225 (LOZ89_18225) dapA 3810585..3811478 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LOZ89_RS18230 (LOZ89_18230) - 3811494..3812096 (+) 603 WP_001177091.1 hypothetical protein -
  LOZ89_RS18235 (LOZ89_18235) purC 3812134..3812853 (+) 720 WP_188200015.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LOZ89_RS18240 (LOZ89_18240) - 3813046..3813249 (+) 204 WP_000418560.1 hypothetical protein -
  LOZ89_RS18245 (LOZ89_18245) - 3813535..3814374 (+) 840 WP_000349489.1 formate/nitrite transporter family protein -
  LOZ89_RS18250 (LOZ89_18250) rarA 3814390..3815655 (-) 1266 WP_030423586.1 replication-associated recombination protein A Machinery gene
  LOZ89_RS18255 (LOZ89_18255) - 3815761..3816933 (-) 1173 WP_005127814.1 PQQ-dependent sugar dehydrogenase -
  LOZ89_RS18260 (LOZ89_18260) - 3817043..3817501 (-) 459 WP_005127813.1 YcgN family cysteine cluster protein -
  LOZ89_RS18265 (LOZ89_18265) - 3817696..3817854 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LOZ89_RS18270 (LOZ89_18270) - 3818026..3818763 (+) 738 WP_005127812.1 dienelactone hydrolase family protein -
  LOZ89_RS18275 (LOZ89_18275) - 3818949..3819311 (+) 363 WP_000130110.1 HIT family protein -
  LOZ89_RS18280 (LOZ89_18280) mutY 3819452..3820486 (+) 1035 WP_005127811.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46933.54 Da        Isoelectric Point: 5.4712

>NTDB_id=546464 LOZ89_RS18250 WP_030423586.1 3814390..3815655(-) (rarA) [Acinetobacter baumannii strain SHOU-Ab01]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDESGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=546464 LOZ89_RS18250 WP_030423586.1 3814390..3815655(-) (rarA) [Acinetobacter baumannii strain SHOU-Ab01]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACGAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.5

95.012

0.385