Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   J3Q17_RS07265 Genome accession   NZ_CP071576
Coordinates   1431202..1431810 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain R12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426202..1436810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q17_RS07240 (J3Q17_07240) - 1426359..1427123 (+) 765 WP_002890500.1 TIGR02757 family protein -
  J3Q17_RS07245 (J3Q17_07245) - 1427127..1427891 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q17_RS07250 (J3Q17_07250) ctsF 1427884..1429065 (-) 1182 WP_002855848.1 type II secretion system F family protein Machinery gene
  J3Q17_RS07255 (J3Q17_07255) ctsE 1429062..1430621 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  J3Q17_RS07260 (J3Q17_07260) ctsX 1430611..1431198 (-) 588 WP_002851370.1 membrane protein Machinery gene
  J3Q17_RS07265 (J3Q17_07265) ctsP 1431202..1431810 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  J3Q17_RS07270 (J3Q17_07270) mshL 1431803..1433214 (-) 1412 Protein_1426 pilus (MSHA type) biogenesis protein MshL -
  J3Q17_RS07275 (J3Q17_07275) ctsR 1433192..1433503 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=546409 J3Q17_RS07265 WP_002851464.1 1431202..1431810(-) (ctsP) [Campylobacter jejuni strain R12]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=546409 J3Q17_RS07265 WP_002851464.1 1431202..1431810(-) (ctsP) [Campylobacter jejuni strain R12]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995