Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LO010_RS00295 Genome accession   NZ_CP087335
Coordinates   62894..64159 (+) Length   421 a.a.
NCBI ID   WP_258580341.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57894..69159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS00265 mutY 58063..59097 (-) 1035 WP_258580340.1 A/G-specific adenine glycosylase -
  LO010_RS00270 - 59238..59600 (-) 363 WP_000130110.1 HIT family protein -
  LO010_RS00275 - 59786..60523 (-) 738 WP_249497824.1 dienelactone hydrolase family protein -
  LO010_RS00280 - 60695..60853 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LO010_RS00285 - 61048..61506 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  LO010_RS00290 - 61619..62788 (+) 1170 Protein_51 PQQ-dependent sugar dehydrogenase -
  LO010_RS00295 rarA 62894..64159 (+) 1266 WP_258580341.1 replication-associated recombination protein A Machinery gene
  LO010_RS00300 - 64174..65013 (-) 840 WP_000349489.1 formate/nitrite transporter family protein -
  LO010_RS00305 - 65299..65502 (-) 204 WP_000418560.1 hypothetical protein -
  LO010_RS00310 purC 65695..66414 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LO010_RS00315 - 66451..67053 (-) 603 WP_001177091.1 hypothetical protein -
  LO010_RS00320 dapA 67069..67962 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LO010_RS00325 pncA 68292..68936 (+) 645 WP_002072188.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46957.65 Da        Isoelectric Point: 5.8354

>NTDB_id=545375 LO010_RS00295 WP_258580341.1 62894..64159(+) (rarA) [Acinetobacter baumannii strain DB053]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYILNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=545375 LO010_RS00295 WP_258580341.1 62894..64159(+) (rarA) [Acinetobacter baumannii strain DB053]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATATCTTAAACAGTTTAGACAGTGAAGCAATTCAGACA
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-149)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375