Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LO004_RS01215 Genome accession   NZ_CP087331
Coordinates   249873..251138 (+) Length   421 a.a.
NCBI ID   WP_001285405.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 244873..256138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS01185 mutY 245042..246076 (-) 1035 WP_001113878.1 A/G-specific adenine glycosylase -
  LO004_RS01190 - 246217..246579 (-) 363 WP_000130110.1 HIT family protein -
  LO004_RS01195 - 246765..247502 (-) 738 WP_000100769.1 dienelactone hydrolase family protein -
  LO004_RS01200 - 247674..247832 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LO004_RS01205 - 248027..248485 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  LO004_RS01210 - 248598..249767 (+) 1170 WP_002040427.1 PQQ-dependent sugar dehydrogenase -
  LO004_RS01215 rarA 249873..251138 (+) 1266 WP_001285405.1 replication-associated recombination protein A Machinery gene
  LO004_RS01220 - 251153..251992 (-) 840 WP_000349497.1 formate/nitrite transporter family protein -
  LO004_RS01225 - 252278..252481 (-) 204 WP_000418560.1 hypothetical protein -
  LO004_RS01230 purC 252674..253393 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LO004_RS01235 - 253431..254033 (-) 603 WP_001177091.1 hypothetical protein -
  LO004_RS01240 dapA 254049..254942 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LO004_RS01245 pncA 255272..255916 (+) 645 WP_002020317.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46946.67 Da        Isoelectric Point: 6.0204

>NTDB_id=545302 LO004_RS01215 WP_001285405.1 249873..251138(+) (rarA) [Acinetobacter baumannii strain LMG994]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQKDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=545302 LO004_RS01215 WP_001285405.1 249873..251138(+) (rarA) [Acinetobacter baumannii strain LMG994]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACATTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAAAGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCGGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTACAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387