Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LO013_RS00420 Genome accession   NZ_CP087325
Coordinates   82401..83666 (+) Length   421 a.a.
NCBI ID   WP_001285407.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77401..88666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS00390 - 77886..78248 (-) 363 WP_000130110.1 HIT family protein -
  LO013_RS00395 - 78433..79170 (-) 738 WP_000100767.1 dienelactone hydrolase family protein -
  LO013_RS00400 - 79342..79500 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LO013_RS00405 - 79695..80153 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  LO013_RS00410 - 80223..80969 (-) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -
  LO013_RS00415 - 81126..82295 (+) 1170 WP_079255503.1 PQQ-dependent sugar dehydrogenase -
  LO013_RS00420 rarA 82401..83666 (+) 1266 WP_001285407.1 replication-associated recombination protein A Machinery gene
  LO013_RS00425 - 83681..84520 (-) 840 WP_000349492.1 formate/nitrite transporter family protein -
  LO013_RS00430 - 84805..85008 (-) 204 WP_000418560.1 hypothetical protein -
  LO013_RS00435 purC 85197..85916 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LO013_RS00440 - 85954..86556 (-) 603 WP_001177091.1 hypothetical protein -
  LO013_RS00445 dapA 86572..87465 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LO013_RS00450 pncA 87795..88439 (+) 645 WP_000783437.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46946.63 Da        Isoelectric Point: 5.8354

>NTDB_id=545145 LO013_RS00420 WP_001285407.1 82401..83666(+) (rarA) [Acinetobacter baumannii strain OC073]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAIVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=545145 LO013_RS00420 WP_001285407.1 82401..83666(+) (rarA) [Acinetobacter baumannii strain OC073]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACATTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAATTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTGGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTATCCAGAGCACTTTGTACTGCAAGATTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387