Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   J1C67_RS04295 Genome accession   NZ_CP071376
Coordinates   885435..887288 (-) Length   617 a.a.
NCBI ID   WP_207253561.1    Uniprot ID   -
Organism   Clostridium gasigenes strain CGAS001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 880435..892288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1C67_RS19630 - 881541..881663 (+) 123 WP_279286189.1 hypothetical protein -
  J1C67_RS04285 (J1C67_04285) - 882475..883539 (+) 1065 WP_207253560.1 HD domain-containing phosphohydrolase -
  J1C67_RS04290 (J1C67_04290) - 884122..885327 (+) 1206 WP_167866920.1 DHHA1 domain-containing protein -
  J1C67_RS04295 (J1C67_04295) rcrQ 885435..887288 (-) 1854 WP_207253561.1 ABC transporter ATP-binding protein Regulator
  J1C67_RS04300 (J1C67_04300) - 887281..889536 (-) 2256 WP_167866919.1 ABC transporter ATP-binding protein -
  J1C67_RS04305 (J1C67_04305) - 889766..890209 (+) 444 WP_167866918.1 MarR family transcriptional regulator -
  J1C67_RS04310 (J1C67_04310) - 890348..890503 (-) 156 WP_089969325.1 hypothetical protein -
  J1C67_RS04315 (J1C67_04315) - 890687..891073 (-) 387 WP_089969323.1 HEPN domain-containing protein -
  J1C67_RS04320 (J1C67_04320) - 891077..891433 (-) 357 WP_089969320.1 nucleotidyltransferase domain-containing protein -
  J1C67_RS04325 (J1C67_04325) - 891705..892136 (-) 432 WP_089969317.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68310.17 Da        Isoelectric Point: 6.0478

>NTDB_id=545100 J1C67_RS04295 WP_207253561.1 885435..887288(-) (rcrQ) [Clostridium gasigenes strain CGAS001]
MSKEKNGTGKGFGGGPMGGMGAGEKAKNFKGTMKELLKYLKPYKIAIILVVIFAIGSAAFSIVGPKMLGKATTEIFNGLM
GKVQGTVGTGIDFEYIGKILILLLGLYLISAAFSFIQGFVMSGVSQKVSYNMRKEISEKINRMPLKYFDTKTHGEVLSRV
TNDVDSISQNLNQSMTQVITAITTIIGILIMMLSISWMMTIIALLILPISGLLITSVVKKSQKYFKEQQEYLGHVNGQVE
EVYGGHNIVKAFNGEEDVIEEFNKINTKLYESSWKSQFLSGMMMPIMTFVGNLGYVMVSILGGWLAIKKTIEVGDILSFI
QYVRSFNQPIAQTAQVANLMQSTAAAAERVFEFLDEEEEVQFAKNPASIEGINGEVTFKNVHFGYNPEKTIINNFSANVK
PGKKVAIVGPTGAGKTTMVKLLMRFYDVNTGEILIDGHNIQDFNRDDLRELFGMVLQETWLFNGTIMENIRYGRLDATDE
EVIDAAKAAHAHHFIKTLPDGYNMVLNEEASNVSQGQKQLLTIARAILADPRLLILDEATSSVDTRTEVLIQKAMENLMA
NRTSFIIAHRLSTIRDADLILVMKDGDIIEQGNHVELLEANGFYASLYNSQFEQMEA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=545100 J1C67_RS04295 WP_207253561.1 885435..887288(-) (rcrQ) [Clostridium gasigenes strain CGAS001]
ATGAGTAAAGAAAAAAATGGAACTGGAAAAGGCTTTGGAGGTGGCCCTATGGGTGGCATGGGAGCTGGAGAAAAAGCGAA
GAACTTTAAAGGTACAATGAAAGAACTACTTAAATATTTAAAACCATATAAAATAGCTATAATATTAGTAGTTATTTTTG
CAATAGGAAGTGCAGCGTTTTCAATAGTTGGACCAAAAATGCTAGGTAAAGCGACTACGGAAATTTTCAATGGCCTTATG
GGAAAGGTGCAGGGAACAGTAGGTACTGGTATTGATTTTGAATATATAGGTAAAATTTTAATATTATTACTAGGATTATA
TTTAATAAGTGCAGCATTTTCATTTATACAAGGATTTGTTATGTCGGGAGTTTCACAAAAAGTTTCTTATAATATGAGAA
AAGAAATTTCAGAAAAAATTAATCGTATGCCACTTAAATATTTTGATACTAAAACTCATGGGGAAGTATTATCTAGGGTT
ACAAATGATGTTGATAGTATAAGTCAAAATTTAAATCAAAGTATGACCCAAGTTATTACAGCAATTACAACTATAATAGG
TATACTAATAATGATGTTATCAATAAGTTGGATGATGACAATTATAGCATTATTAATATTACCTATATCAGGACTACTAA
TTACTTCAGTTGTGAAAAAATCACAAAAATACTTTAAAGAGCAACAAGAATATTTAGGTCATGTAAATGGTCAAGTTGAA
GAAGTATATGGTGGACACAATATAGTAAAAGCATTTAATGGAGAAGAGGATGTAATTGAGGAGTTTAATAAAATAAATAC
TAAGTTGTACGAATCCTCTTGGAAGTCACAATTCTTATCAGGAATGATGATGCCTATAATGACATTCGTAGGAAACTTAG
GATATGTAATGGTGTCTATTCTTGGTGGATGGCTTGCAATTAAGAAAACTATTGAAGTTGGAGATATCCTTTCATTTATA
CAATATGTAAGAAGTTTTAATCAGCCAATAGCTCAAACAGCTCAAGTTGCAAACTTAATGCAATCAACAGCAGCCGCAGC
AGAAAGAGTATTTGAGTTCTTAGATGAAGAAGAGGAAGTTCAATTTGCTAAAAACCCAGCTAGCATAGAGGGTATAAATG
GAGAGGTTACATTTAAGAATGTTCATTTTGGATACAATCCAGAAAAAACAATTATAAATAATTTCTCAGCTAATGTTAAA
CCAGGTAAAAAGGTTGCAATAGTTGGTCCAACTGGTGCTGGAAAAACTACAATGGTAAAACTGCTTATGCGTTTTTATGA
TGTAAACACTGGTGAAATATTAATAGATGGTCACAATATACAAGATTTTAATCGTGATGATTTAAGAGAATTATTTGGAA
TGGTTCTTCAAGAGACTTGGTTATTCAATGGAACTATTATGGAAAATATAAGATATGGAAGATTAGATGCAACCGATGAG
GAAGTTATAGATGCTGCTAAGGCTGCACATGCGCATCATTTTATTAAAACACTTCCAGATGGATATAATATGGTTCTAAA
TGAAGAAGCTAGCAATGTATCACAAGGACAAAAGCAATTGTTAACAATTGCCCGTGCTATTTTAGCAGATCCAAGACTTC
TTATACTTGATGAAGCTACAAGTTCAGTAGACACTCGTACAGAAGTTTTAATACAAAAGGCTATGGAAAATCTTATGGCT
AACAGAACAAGTTTCATAATAGCACATAGATTATCAACAATAAGAGATGCAGATTTAATACTAGTAATGAAAGATGGGGA
TATAATAGAACAAGGAAACCATGTTGAATTATTAGAAGCAAATGGATTCTATGCATCATTATATAATAGTCAATTTGAAC
AAATGGAAGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.479

94.814

0.498