Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO007_RS08330 Genome accession   NZ_CP087312
Coordinates   1759422..1760057 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754422..1765057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS08305 - 1755262..1756275 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  LO007_RS08310 murU 1756275..1756964 (+) 690 WP_032000517.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO007_RS08315 rsmG 1757052..1757684 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO007_RS08320 - 1757706..1758488 (+) 783 WP_000057212.1 ParA family protein -
  LO007_RS08325 - 1758485..1759372 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LO007_RS08330 exbB 1759422..1760057 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO007_RS08335 - 1760073..1760501 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  LO007_RS08340 msbA 1760498..1762225 (+) 1728 WP_001070731.1 lipid A export permease/ATP-binding protein MsbA -
  LO007_RS08345 lpxK 1762228..1763238 (+) 1011 WP_000050463.1 tetraacyldisaccharide 4'-kinase -
  LO007_RS08350 kdsB 1763248..1764009 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO007_RS08355 - 1764021..1765001 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=544946 LO007_RS08330 WP_000264035.1 1759422..1760057(+) (exbB) [Acinetobacter baumannii strain OC059]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544946 LO007_RS08330 WP_000264035.1 1759422..1760057(+) (exbB) [Acinetobacter baumannii strain OC059]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393