Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   J0W32_RS06415 Genome accession   NZ_CP071317
Coordinates   1336909..1337343 (-) Length   144 a.a.
NCBI ID   WP_104473452.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN15X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1331909..1342343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS06375 (J0W32_06375) - 1332592..1333518 (+) 927 WP_374855854.1 esterase/lipase family protein -
  J0W32_RS14665 - 1333582..1334557 (+) 976 Protein_1238 esterase/lipase family protein -
  J0W32_RS06395 (J0W32_06395) rplS 1334618..1334986 (-) 369 WP_104500703.1 50S ribosomal protein L19 -
  J0W32_RS06400 (J0W32_06400) trmD 1335160..1335909 (-) 750 WP_206862892.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J0W32_RS06405 (J0W32_06405) rimM 1335936..1336484 (-) 549 WP_075167879.1 ribosome maturation factor RimM -
  J0W32_RS06410 (J0W32_06410) rpsP 1336513..1336770 (-) 258 WP_004809941.1 30S ribosomal protein S16 -
  J0W32_RS06415 (J0W32_06415) pilE 1336909..1337343 (-) 435 WP_104473452.1 type IV pilin protein Machinery gene
  J0W32_RS14670 (J0W32_06420) - 1337337..1337972 (-) 636 WP_180088588.1 type IV pilin protein -
  J0W32_RS06425 (J0W32_06425) - 1337977..1341828 (-) 3852 WP_228289524.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15856.22 Da        Isoelectric Point: 8.9420

>NTDB_id=544904 J0W32_RS06415 WP_104473452.1 1336909..1337343(-) (pilE) [Acinetobacter indicus strain GXNN15X4]
MVRQGFTLIELMIVIAIIAILAAIAYPSYQQYKIKVNRAEAQSEMMFIAERMNAYKGMNGSFSGATIAQIYGSTVTPKQG
TALYDLSFDAALTNATRWTLIAQPKAGTLQAGNGWICLNNQSEKYWAKGEARCDLSPNSTWSDK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=544904 J0W32_RS06415 WP_104473452.1 1336909..1337343(-) (pilE) [Acinetobacter indicus strain GXNN15X4]
ATGGTAAGACAAGGGTTTACACTTATAGAACTTATGATTGTCATTGCGATTATTGCAATTTTAGCTGCTATTGCTTATCC
CTCTTATCAGCAATATAAAATTAAAGTAAATCGGGCAGAAGCACAATCAGAGATGATGTTCATTGCTGAAAGAATGAATG
CCTATAAAGGAATGAATGGTTCTTTTTCGGGGGCAACGATTGCACAAATATATGGATCAACAGTAACTCCCAAACAAGGC
ACTGCATTATATGATTTAAGCTTTGATGCTGCACTAACCAATGCAACCCGTTGGACTCTAATTGCTCAACCTAAGGCAGG
TACGTTACAAGCGGGCAATGGTTGGATTTGTTTAAACAATCAATCAGAGAAATATTGGGCAAAAGGCGAAGCGCGTTGTG
ACTTGTCGCCAAACTCTACCTGGTCCGATAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

54.545

99.306

0.542
  comF Acinetobacter baylyi ADP1

48.951

99.306

0.486