Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   JZY07_RS04065 Genome accession   NZ_CP071305
Coordinates   810687..811526 (+) Length   279 a.a.
NCBI ID   WP_024400740.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 805687..816526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS04035 (JZY07_04035) - 806151..807029 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  JZY07_RS04040 (JZY07_04040) atpD 807049..808455 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  JZY07_RS04045 (JZY07_04045) - 808465..808881 (+) 417 WP_024412363.1 F0F1 ATP synthase subunit epsilon -
  JZY07_RS04050 (JZY07_04050) - 808941..809165 (+) 225 WP_024387485.1 DUF1146 family protein -
  JZY07_RS04055 (JZY07_04055) murA 809190..810473 (+) 1284 WP_024400741.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JZY07_RS04060 (JZY07_04060) - 810466..810657 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  JZY07_RS04065 (JZY07_04065) endA 810687..811526 (+) 840 WP_024400740.1 DNA/RNA non-specific endonuclease Machinery gene
  JZY07_RS04070 (JZY07_04070) - 811713..813266 (+) 1554 WP_024394170.1 MFS transporter -
  JZY07_RS04075 (JZY07_04075) - 813322..814355 (+) 1034 Protein_763 sugar kinase -
  JZY07_RS04080 (JZY07_04080) uidA 814371..816173 (+) 1803 WP_024412362.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30152.33 Da        Isoelectric Point: 5.9450

>NTDB_id=544862 JZY07_RS04065 WP_024400740.1 810687..811526(+) (endA) [Streptococcus suis strain SC183]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNMSSNVADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=544862 JZY07_RS04065 WP_024400740.1 810687..811526(+) (endA) [Streptococcus suis strain SC183]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACATGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAAGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599