Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JZY07_RS00865 Genome accession   NZ_CP071305
Coordinates   135773..136726 (+) Length   317 a.a.
NCBI ID   WP_024399994.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 127806..136726 135773..136726 within 0


Gene organization within MGE regions


Location: 127806..136726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS00805 (JZY07_00805) - 127806..128645 (-) 840 WP_024399985.1 ATP-binding protein -
  JZY07_RS00810 (JZY07_00810) - 128657..129501 (-) 845 Protein_128 phage replisome organizer N-terminal domain-containing protein -
  JZY07_RS00815 (JZY07_00815) - 129491..129769 (-) 279 WP_024399988.1 hypothetical protein -
  JZY07_RS00820 (JZY07_00820) - 129762..130151 (-) 390 WP_242513102.1 DNA-binding protein -
  JZY07_RS00825 (JZY07_00825) - 130252..130464 (-) 213 WP_024399990.1 hypothetical protein -
  JZY07_RS00830 (JZY07_00830) - 130467..130670 (-) 204 WP_024387085.1 hypothetical protein -
  JZY07_RS00835 (JZY07_00835) - 131058..131348 (-) 291 WP_024387086.1 hypothetical protein -
  JZY07_RS00840 (JZY07_00840) - 131364..131981 (-) 618 WP_024392888.1 Rha family transcriptional regulator -
  JZY07_RS00845 (JZY07_00845) - 132131..132319 (-) 189 WP_024399991.1 DNA-binding protein -
  JZY07_RS00850 (JZY07_00850) - 132469..133167 (+) 699 WP_050571572.1 helix-turn-helix transcriptional regulator -
  JZY07_RS00855 (JZY07_00855) - 133388..134278 (+) 891 WP_024399992.1 Abi family protein -
  JZY07_RS00860 (JZY07_00860) - 134531..135676 (+) 1146 WP_024399993.1 site-specific integrase -
  JZY07_RS00865 (JZY07_00865) comYH 135773..136726 (+) 954 WP_024399994.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35662.78 Da        Isoelectric Point: 4.4133

>NTDB_id=544842 JZY07_RS00865 WP_024399994.1 135773..136726(+) (comYH) [Streptococcus suis strain SC183]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVINNNKTLKQLDLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTSKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSLQ
SDLLKGWLQEQANIVAMIALPPSLFGKAAMAKSIFVLQKKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=544842 JZY07_RS00865 WP_024399994.1 135773..136726(+) (comYH) [Streptococcus suis strain SC183]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTGGGTACCAA
TATCTATGATGCAATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACAGATCTTGTTATCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGCCGTGCCTTCCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTGGACCAACTAGTATC
TACTTCCAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACTATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGTCGTTATCAGGTTGCCAGTCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAGTCCCTCAAATATCTGGAAAAGGATGGATTCGCTATTCTCTTGGCTCCAAATGATTTGTTGACTAGTCTGCAA
AGCGATTTACTGAAAGGCTGGTTACAAGAACAAGCCAATATCGTTGCCATGATTGCCCTGCCACCAAGTCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGACCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

61.076

99.685

0.609
  comYH Streptococcus mutans UA159

60.759

99.685

0.606