Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LO005_RS00290 Genome accession   NZ_CP087309
Coordinates   61709..62974 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain OC068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56709..67974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS00260 mutY 56879..57913 (-) 1035 WP_029424044.1 A/G-specific adenine glycosylase -
  LO005_RS00265 - 58054..58416 (-) 363 WP_000130110.1 HIT family protein -
  LO005_RS00270 - 58602..59339 (-) 738 WP_000100768.1 dienelactone hydrolase family protein -
  LO005_RS00275 - 59510..59668 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LO005_RS00280 - 59863..60321 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  LO005_RS00285 - 60434..61603 (+) 1170 WP_077932461.1 PQQ-dependent sugar dehydrogenase -
  LO005_RS00290 rarA 61709..62974 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  LO005_RS00295 - 62989..63828 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  LO005_RS00300 - 64114..64317 (-) 204 WP_029424046.1 hypothetical protein -
  LO005_RS00305 purC 64510..65229 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LO005_RS00310 - 65266..65868 (-) 603 WP_001177091.1 hypothetical protein -
  LO005_RS00315 dapA 65884..66777 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LO005_RS00320 pncA 67107..67751 (+) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=544834 LO005_RS00290 WP_001285409.1 61709..62974(+) (rarA) [Acinetobacter baumannii strain OC068]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=544834 LO005_RS00290 WP_001285409.1 61709..62974(+) (rarA) [Acinetobacter baumannii strain OC068]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGAGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCACCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387