Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J0J35_RS08995 Genome accession   NZ_CP071301
Coordinates   1818427..1819218 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus sp. LG606     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813427..1824218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS08965 (J0J35_08965) rpmH 1814124..1814258 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  J0J35_RS08970 (J0J35_08970) - 1814408..1815319 (+) 912 WP_173816951.1 aldo/keto reductase family oxidoreductase -
  J0J35_RS08975 (J0J35_08975) - 1815509..1815775 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  J0J35_RS08980 (J0J35_08980) ruvX 1815775..1816203 (+) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  J0J35_RS08985 (J0J35_08985) - 1816218..1816541 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  J0J35_RS08990 (J0J35_08990) - 1816683..1818290 (+) 1608 WP_206916682.1 glycosyltransferase -
  J0J35_RS08995 (J0J35_08995) codY 1818427..1819218 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J0J35_RS09000 (J0J35_09000) gatC 1819364..1819669 (+) 306 WP_206916684.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  J0J35_RS09005 (J0J35_09005) gatA 1819669..1821141 (+) 1473 WP_206916696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  J0J35_RS09010 (J0J35_09010) gatB 1821143..1822576 (+) 1434 WP_003133637.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  J0J35_RS09015 (J0J35_09015) - 1822590..1823945 (-) 1356 WP_206916698.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=544811 J0J35_RS08995 WP_003133634.1 1818427..1819218(+) (codY) [Lactococcus sp. LG606]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=544811 J0J35_RS08995 WP_003133634.1 1818427..1819218(+) (codY) [Lactococcus sp. LG606]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTACGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTCACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483