Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J0J35_RS07455 Genome accession   NZ_CP071301
Coordinates   1510427..1511362 (-) Length   311 a.a.
NCBI ID   WP_019292241.1    Uniprot ID   A0AAJ2IZ38
Organism   Lactococcus sp. LG606     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1499539..1514091 1510427..1511362 within 0


Gene organization within MGE regions


Location: 1499539..1514091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS07390 (J0J35_07390) rplA 1499539..1500228 (-) 690 WP_003133341.1 50S ribosomal protein L1 -
  J0J35_RS07395 (J0J35_07395) rplK 1500318..1500743 (-) 426 WP_003133340.1 50S ribosomal protein L11 -
  J0J35_RS07400 (J0J35_07400) - 1500870..1501499 (-) 630 WP_206916435.1 ABC transporter ATP-binding protein -
  J0J35_RS07405 (J0J35_07405) - 1501506..1503578 (-) 2073 WP_206916438.1 DUF1430 domain-containing protein -
  J0J35_RS07410 (J0J35_07410) - 1503585..1503983 (-) 399 WP_019292234.1 hypothetical protein -
  J0J35_RS07415 (J0J35_07415) - 1504217..1504588 (-) 372 WP_046400839.1 VOC family protein -
  J0J35_RS07420 (J0J35_07420) - 1504606..1504821 (-) 216 WP_003133330.1 YozE family protein -
  J0J35_RS07425 (J0J35_07425) msrA 1504818..1505333 (-) 516 WP_019292236.1 peptide-methionine (S)-S-oxide reductase MsrA -
  J0J35_RS07430 (J0J35_07430) - 1505473..1506333 (-) 861 WP_206916442.1 S1 RNA-binding domain-containing protein -
  J0J35_RS07435 (J0J35_07435) frr 1506445..1507002 (-) 558 WP_017368646.1 ribosome recycling factor -
  J0J35_RS07440 (J0J35_07440) pyrH 1507031..1507747 (-) 717 WP_019292238.1 UMP kinase -
  J0J35_RS07445 (J0J35_07445) - 1507838..1509031 (-) 1194 WP_019294231.1 acetate kinase -
  J0J35_RS07450 (J0J35_07450) - 1509149..1510342 (-) 1194 WP_019294232.1 acetate kinase -
  J0J35_RS07455 (J0J35_07455) comYH 1510427..1511362 (-) 936 WP_019292241.1 class I SAM-dependent methyltransferase Machinery gene
  J0J35_RS07460 (J0J35_07460) - 1511408..1511638 (-) 231 WP_019292242.1 DUF3165 family protein -
  J0J35_RS07465 (J0J35_07465) typA 1511717..1513558 (-) 1842 WP_019335381.1 translational GTPase TypA -
  J0J35_RS07470 (J0J35_07470) - 1513879..1514091 (+) 213 WP_003133311.1 YqgQ family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35095.12 Da        Isoelectric Point: 4.6120

>NTDB_id=544804 J0J35_RS07455 WP_019292241.1 1510427..1511362(-) (comYH) [Lactococcus sp. LG606]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=544804 J0J35_RS07455 WP_019292241.1 1510427..1511362(-) (comYH) [Lactococcus sp. LG606]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTGCACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGTTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492