Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   UC509_RS09940 Genome accession   NC_019435
Coordinates   1974084..1975022 (-) Length   312 a.a.
NCBI ID   WP_015082878.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris UC509.9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969084..1980022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC509_RS09915 (uc509_1977) frr 1969263..1969820 (-) 558 WP_011677081.1 ribosome recycling factor -
  UC509_RS09920 (uc509_1978) pyrH 1969976..1970692 (-) 717 WP_004254608.1 UMP kinase -
  UC509_RS09925 (uc509_1979) - 1970777..1971229 (-) 453 WP_011677082.1 hypothetical protein -
  UC509_RS09930 (uc509_1981) - 1971359..1972546 (-) 1188 WP_015082877.1 acetate kinase -
  UC509_RS09935 (uc509_1982) - 1972705..1973892 (-) 1188 WP_011677084.1 acetate kinase -
  UC509_RS09940 (uc509_1983) comYH 1974084..1975022 (-) 939 WP_015082878.1 class I SAM-dependent methyltransferase Machinery gene
  UC509_RS09945 (uc509_1984) - 1975110..1975361 (-) 252 WP_011677086.1 DUF3165 family protein -
  UC509_RS09950 (uc509_1985) typA 1975462..1977294 (-) 1833 WP_031286284.1 translational GTPase TypA -
  UC509_RS13945 (uc509_1986) - 1977471..1977944 (-) 474 WP_015082879.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34794.80 Da        Isoelectric Point: 4.3323

>NTDB_id=54475 UC509_RS09940 WP_015082878.1 1974084..1975022(-) (comYH) [Lactococcus cremoris subsp. cremoris UC509.9]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQEIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVVKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=54475 UC509_RS09940 WP_015082878.1 1974084..1975022(-) (comYH) [Lactococcus cremoris subsp. cremoris UC509.9]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGAAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGTGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment