Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J0J33_RS01125 Genome accession   NZ_CP071295
Coordinates   220559..221494 (-) Length   311 a.a.
NCBI ID   WP_019292241.1    Uniprot ID   A0AAJ2IZ38
Organism   Lactococcus sp. LG1267     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 215559..226494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J33_RS01100 (J0J33_01100) - 215605..216465 (-) 861 WP_206888026.1 S1 RNA-binding domain-containing protein -
  J0J33_RS01105 (J0J33_01105) frr 216576..217133 (-) 558 WP_206921747.1 ribosome recycling factor -
  J0J33_RS01110 (J0J33_01110) pyrH 217162..217878 (-) 717 WP_019292238.1 UMP kinase -
  J0J33_RS01115 (J0J33_01115) - 217969..219162 (-) 1194 WP_165720166.1 acetate kinase -
  J0J33_RS01120 (J0J33_01120) - 219281..220474 (-) 1194 WP_019294232.1 acetate kinase -
  J0J33_RS01125 (J0J33_01125) comYH 220559..221494 (-) 936 WP_019292241.1 class I SAM-dependent methyltransferase Machinery gene
  J0J33_RS01130 (J0J33_01130) - 221540..221770 (-) 231 WP_019292242.1 DUF3165 family protein -
  J0J33_RS01135 (J0J33_01135) typA 221845..223686 (-) 1842 WP_206888029.1 translational GTPase TypA -
  J0J33_RS01140 (J0J33_01140) - 224007..224219 (+) 213 WP_003133311.1 YqgQ family protein -
  J0J33_RS01145 (J0J33_01145) - 224212..225177 (+) 966 WP_061414320.1 ROK family glucokinase -
  J0J33_RS01150 (J0J33_01150) - 225197..225577 (+) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  J0J33_RS01155 (J0J33_01155) - 225616..226062 (-) 447 WP_003133306.1 DNA starvation/stationary phase protection protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35095.12 Da        Isoelectric Point: 4.6120

>NTDB_id=544699 J0J33_RS01125 WP_019292241.1 220559..221494(-) (comYH) [Lactococcus sp. LG1267]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=544699 J0J33_RS01125 WP_019292241.1 220559..221494(-) (comYH) [Lactococcus sp. LG1267]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492