Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LO009_RS17205 Genome accession   NZ_CP087298
Coordinates   3591412..3591876 (-) Length   154 a.a.
NCBI ID   WP_004745412.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586412..3596876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS17175 - 3586939..3587973 (+) 1035 WP_138149873.1 lipase secretion chaperone -
  LO009_RS17180 - 3588088..3589029 (+) 942 WP_138149879.1 triacylglycerol lipase -
  LO009_RS17185 rplS 3589082..3589450 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO009_RS17190 trmD 3589659..3590399 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO009_RS17195 rimM 3590445..3590993 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO009_RS17200 rpsP 3591013..3591264 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO009_RS17205 pilE 3591412..3591876 (-) 465 WP_004745412.1 type IV pilin protein Machinery gene
  LO009_RS17210 pilY2 3591870..3592346 (-) 477 WP_138149871.1 type IV pilin protein Machinery gene
  LO009_RS17215 - 3592360..3596034 (-) 3675 WP_138149869.1 PilC/PilY family type IV pilus protein -
  LO009_RS17220 - 3596050..3596832 (-) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16812.42 Da        Isoelectric Point: 9.3896

>NTDB_id=544664 LO009_RS17205 WP_004745412.1 3591412..3591876(-) (pilE) [Acinetobacter baumannii strain OC070]
MVNKIKGFTLIELMIAVAIIAVLAAIAYPSYLEHVRHTKRVEMQTTLQQIAMQIQRYKIANFKVVGATSSDFNIAASYPV
QGTPLYIVNLTPVTSGSLTAETWILTATPIANTPQSGDGHIVLNYRGERCWTKGTDINSGRACVPSVTSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=544664 LO009_RS17205 WP_004745412.1 3591412..3591876(-) (pilE) [Acinetobacter baumannii strain OC070]
GTGGTAAATAAAATAAAAGGTTTTACCTTAATTGAGTTAATGATTGCTGTAGCAATTATTGCGGTTTTAGCAGCGATAGC
TTATCCCTCTTATCTGGAGCATGTCCGTCATACCAAACGTGTGGAAATGCAAACTACTTTGCAACAGATTGCTATGCAGA
TTCAGCGATACAAGATTGCAAACTTTAAAGTAGTTGGAGCAACAAGTTCAGATTTTAATATTGCAGCATCCTATCCAGTA
CAAGGTACGCCTCTTTATATAGTCAATCTGACCCCTGTTACATCAGGTTCTTTGACTGCTGAAACATGGATATTAACTGC
GACACCGATTGCAAATACTCCACAATCTGGAGATGGGCATATTGTCTTAAATTATCGTGGTGAACGGTGCTGGACAAAAG
GGACCGATATTAACAGTGGTAGGGCTTGTGTTCCTTCTGTGACCTCGAATTGGGATGGCAAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

44.898

95.455

0.429
  comF Acinetobacter baylyi ADP1

43.919

96.104

0.422