Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BLI009_RS01935 Genome accession   NZ_CP071248
Coordinates   450727..452565 (-) Length   612 a.a.
NCBI ID   WP_206648857.1    Uniprot ID   A0AAX1LLY6
Organism   Bifidobacterium longum subsp. infantis strain JCM 7009     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 452632..465913 450727..452565 flank 67


Gene organization within MGE regions


Location: 450727..465913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLI009_RS01935 (BLI009_01935) rcrQ 450727..452565 (-) 1839 WP_206648857.1 ABC transporter ATP-binding protein Regulator
  BLI009_RS01940 (BLI009_01940) rcrP 452632..454503 (-) 1872 WP_206648858.1 ABC transporter ATP-binding protein Regulator
  BLI009_RS01945 (BLI009_01945) - 454738..455268 (-) 531 WP_065436543.1 MarR family winged helix-turn-helix transcriptional regulator -
  BLI009_RS01950 (BLI009_01950) - 455413..456936 (-) 1524 WP_206648859.1 amino acid permease -
  BLI009_RS01955 (BLI009_01955) - 457123..460887 (-) 3765 WP_206648860.1 FtsX-like permease family protein -
  BLI009_RS01960 (BLI009_01960) - 460896..461597 (-) 702 WP_012578658.1 ABC transporter ATP-binding protein -
  BLI009_RS01965 (BLI009_01965) - 461844..463325 (+) 1482 WP_041982193.1 amino acid permease -
  BLI009_RS01970 (BLI009_01970) - 463410..464045 (-) 636 WP_206648861.1 YesL family protein -
  BLI009_RS01975 (BLI009_01975) - 464217..465059 (-) 843 WP_012578661.1 carbohydrate ABC transporter permease -
  BLI009_RS01980 (BLI009_01980) - 465059..465913 (-) 855 WP_012578662.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67057.51 Da        Isoelectric Point: 6.5047

>NTDB_id=544273 BLI009_RS01935 WP_206648857.1 450727..452565(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain JCM 7009]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIIGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTRSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=544273 BLI009_RS01935 WP_206648857.1 450727..452565(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain JCM 7009]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCGCTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAAATCGTCAAGGGCCTGCCCGCCATCGTCAACGGCAGACCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCGCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTTGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTACGAGATCTCCGG
CGGCTCGATTGCGATCGACGGCGTGGACACCAGGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGTTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTC
GTCGTTGTCCCAAGGGCAGAAGCAGCTGCTCACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATCCTGATTCTCGACG
AGGCCACGTCCTCGGTCGACACCCGTACCGAGGAACTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGCACGTCG
TTCGTGATCGCCCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCACGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGATCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.592

96.078

0.525