Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LN356_RS01860 Genome accession   NZ_CP086627
Coordinates   391606..392370 (-) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C036569     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 386606..397370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN356_RS01850 (LN356_01850) nikR 390397..390798 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  LN356_RS01855 (LN356_01855) nikE 390803..391609 (-) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  LN356_RS01860 (LN356_01860) amiE 391606..392370 (-) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  LN356_RS01865 (LN356_01865) nikC 392370..393203 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  LN356_RS01870 (LN356_01870) nikB 393200..394144 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  LN356_RS01875 (LN356_01875) nikA 394144..395718 (-) 1575 WP_000953368.1 nickel ABC transporter substrate-binding protein -
  LN356_RS01880 (LN356_01880) acpT 395829..396416 (-) 588 WP_000285781.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=543784 LN356_RS01860 WP_001136198.1 391606..392370(-) (amiE) [Escherichia coli strain RIVM_C036569]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=543784 LN356_RS01860 WP_001136198.1 391606..392370(-) (amiE) [Escherichia coli strain RIVM_C036569]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402