Detailed information NTG0543129

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: JZI59_RS07440
• Genome accession: NZ_CP071144
• Coordinates: 1538494..1539429 (+)
• Length: 311 a.a.
• NCBI ID: WP_012678999.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain 470_008
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1533494..1544429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZI59_RS07420 (JZI59_07420)	-	1533654..1535312 (+)	1659	WP_012678995.1	peptide ABC transporter substrate-binding protein	-
JZI59_RS07425 (JZI59_07425)	-	1535481..1536395 (+)	915	WP_012678996.1	ABC transporter permease	-
JZI59_RS07430 (JZI59_07430)	-	1536405..1537436 (+)	1032	WP_012678997.1	ABC transporter permease	-
JZI59_RS07435 (JZI59_07435)	oppD	1537448..1538494 (+)	1047	WP_012678998.1	ABC transporter ATP-binding protein	Regulator
JZI59_RS07440 (JZI59_07440)	amiF	1538494..1539429 (+)	936	WP_012678999.1	ATP-binding cassette domain-containing protein	Regulator
JZI59_RS07445 (JZI59_07445)	rnjA	1540058..1541740 (-)	1683	WP_214494894.1	ribonuclease J	-
JZI59_RS07450 (JZI59_07450)	-	1541742..1541972 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
JZI59_RS07455 (JZI59_07455)	tsaB	1542258..1542956 (+)	699	WP_012679000.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
JZI59_RS07460 (JZI59_07460)	rimI	1542959..1543384 (+)	426	WP_012679001.1	ribosomal protein S18-alanine N-acetyltransferase	-
JZI59_RS07465 (JZI59_07465)	tsaD	1543374..1544390 (+)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34973.12 Da
• Isoelectric Point: 8.1293

>NTDB_id=543129 JZI59_RS07440 WP_012678999.1 1538494..1539429(+) (amiF) [Streptococcus equi subsp. equi strain 470_008]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQNHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAECGL

Nucleotide

• Length: 936 bp

>NTDB_id=543129 JZI59_RS07440 WP_012678999.1 1538494..1539429(+) (amiF) [Streptococcus equi subsp. equi strain 470_008]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTTTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAAGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGAACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGAATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGTGTGGCCTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.071	0.537
amiF	Streptococcus thermophilus LMG 18311	54.426	98.071	0.534
amiF	Streptococcus salivarius strain HSISS4	54.098	98.071	0.531