Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SCAZ3_RS02685 Genome accession   NZ_AIDX01000001
Coordinates   586713..589145 (+) Length   810 a.a.
NCBI ID   WP_003045204.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581713..594145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS02665 (SCAZ3_09680) - 584137..584682 (-) 546 WP_003045194.1 CvpA family protein -
  SCAZ3_RS02670 (SCAZ3_09685) - 584685..584993 (-) 309 WP_003045196.1 hypothetical protein -
  SCAZ3_RS02675 (SCAZ3_09695) rnhC 585140..586048 (+) 909 WP_003045200.1 ribonuclease HIII -
  SCAZ3_RS02680 (SCAZ3_09700) lepB 586059..586652 (+) 594 WP_003045201.1 signal peptidase I -
  SCAZ3_RS02685 (SCAZ3_09705) recD/recD2/recDB 586713..589145 (+) 2433 WP_003045204.1 SF1B family DNA helicase RecD2 Machinery gene
  SCAZ3_RS02690 (SCAZ3_09710) - 589235..589723 (+) 489 WP_003045206.1 hypothetical protein -
  SCAZ3_RS02695 (SCAZ3_09715) dinB 589815..590909 (-) 1095 WP_003045208.1 DNA polymerase IV -
  SCAZ3_RS02700 (SCAZ3_09720) pflB 591118..593445 (+) 2328 WP_003045209.1 formate C-acetyltransferase -
  SCAZ3_RS02705 (SCAZ3_09725) - 593568..594008 (+) 441 WP_003045211.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91085.78 Da        Isoelectric Point: 4.9473

>NTDB_id=54311 SCAZ3_RS02685 WP_003045204.1 586713..589145(+) (recD/recD2/recDB) [Streptococcus canis FSL Z3-227]
MEYFFTGTVDRIIFENQANFFKILLLTIEDTDSDVDDIDIIITGTMADIVEGEDYTFWGELTQHPKYGQQVKLSRYQKMK
PNSSGLVTYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLESISSLSKVNRQAFVAKLKLNYGTEQIIAGLAELG
LSNRFAFQAFDQYKEEAIELIKENPYRLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINQGDTYVQAR
QLLSVTINLLEDARQVECQPAAVAQQLTSLIEEGNIKNIDTKLFDTSLYFAEEGIAKNIRRLLDQPLDSHLNSEAIQKEI
QALQDKFGITYDQVQQEAIEKALTSKVFLLTGGPGTGKTTVIRGILQAYAKLHQLDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLTGDSDYQTIEDYLDCDLLIVDEFSMVDTWLANQLLSAVSSTTQVIIVGDSDQLPSVGPGQVLADLL
KVKNLPQIALRKIFRQSQESTIVALADQMRRGILAPDFREKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQDLLNPLEEQTEFLFNDTRFRKRDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELVIA
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGELAAFDYAIHNEG
IKRQTYLVERFQEQEPEEKTQTNQTQADLEKSANHLNGQVISRSKAHSTKASLTKQQQPLCVLTPDNFLTIDPMIGITED
DICHFFQKNP

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=54311 SCAZ3_RS02685 WP_003045204.1 586713..589145(+) (recD/recD2/recDB) [Streptococcus canis FSL Z3-227]
ATGGAATACTTTTTCACAGGTACTGTTGACCGTATTATCTTTGAAAACCAAGCTAATTTTTTCAAAATTCTTCTCCTTAC
AATCGAGGATACTGACAGTGATGTGGATGATATAGACATCATTATCACTGGAACCATGGCTGACATTGTGGAAGGGGAAG
ATTATACCTTTTGGGGAGAATTAACCCAGCATCCTAAGTATGGTCAACAAGTCAAGCTGAGCCGTTATCAAAAAATGAAA
CCCAATTCCTCTGGTTTAGTGACTTATTTTTCTAGTGACCATTTCAAGGGGATTGGGAAAAAAACAGCTGAAAAGATTAT
TGCTCTCTATGGCAATAACACCATTGACCATATTTTAGAAGACCCCAGTAAACTGGAAAGCATTTCTAGCCTGTCCAAGG
TCAACCGCCAAGCCTTTGTAGCCAAACTCAAATTAAATTATGGTACCGAACAAATTATTGCTGGCTTAGCAGAGTTAGGC
TTAAGCAACCGTTTTGCCTTTCAAGCCTTTGACCAATACAAGGAAGAAGCCATTGAGCTGATTAAGGAAAATCCTTACCG
GCTAGTCGAAGACCTTCAAGGTTTTGGGTTTAAAATGGCTGATGCCCTAGCTGAAAACTTAGGAATTGAAAGCGACTCTC
CTAAACGTTTTCGGGCAGCTCTTTTGCATTGTCTCTTGGAAGAATCAATCAACCAAGGAGATACTTACGTTCAAGCACGC
CAATTACTATCTGTTACCATTAATCTCTTAGAAGATGCCCGTCAAGTAGAATGTCAGCCAGCTGCTGTTGCCCAACAATT
AACCTCCTTGATTGAAGAGGGCAATATTAAAAATATTGACACCAAGCTTTTTGATACCAGCCTTTACTTTGCTGAGGAAG
GAATTGCCAAAAATATCAGAAGACTTTTAGACCAACCTCTGGACAGTCACCTTAACTCTGAGGCTATCCAGAAAGAAATT
CAAGCCCTTCAAGATAAATTCGGCATCACCTATGATCAAGTCCAACAAGAAGCTATTGAGAAGGCTTTGACCAGCAAAGT
ATTTCTACTAACAGGGGGACCAGGTACTGGAAAAACCACTGTTATTCGAGGAATCTTGCAAGCCTATGCCAAGCTTCACC
AGCTTGACCTTGACAAAAAAGATCTTCCTATTTTATTAGCAGCCCCAACAGGACGAGCAGCTCGGCGGATGAATGAGCTG
ACCGGACTTCCTAGTGCTACTATCCATAGACACCTCGGTTTAACTGGCGATAGTGACTATCAAACCATAGAAGACTATTT
GGATTGTGATTTGCTGATTGTGGATGAATTCTCCATGGTTGATACTTGGCTTGCCAATCAACTGCTATCTGCTGTCAGCT
CGACCACTCAGGTCATTATTGTGGGCGATAGTGACCAGCTGCCTTCTGTCGGCCCTGGGCAAGTGTTGGCAGATCTTTTA
AAGGTCAAAAATCTCCCACAAATTGCCCTAAGGAAAATCTTTCGCCAATCTCAAGAATCAACCATTGTAGCGTTGGCAGA
TCAGATGCGTCGTGGTATTTTAGCTCCAGATTTTAGAGAAAAAAAGGCTGATCGTTCTTATTTTGAAGCACAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTGCTTTCTGCTATCAAAAGCGGTATTCCTGCTGAAGAAATTCAAATTTTAGCC
CCTATGTATAAAGGACAGGCTGGCATCAATCATCTCAATCAACTAATGCAAGATCTCCTCAATCCCTTAGAAGAGCAGAC
AGAATTTCTGTTCAACGACACCCGCTTCCGTAAGAGGGATAAGGTTTTGCACTTGGTCAATGATGCTCAACTCAATGTCT
TTAATGGCGATATTGGTTATATCACTGACTTGATTCCAGCCAAATACACTGAATCCAAGCAGGACGAATTAGTTATAGCA
TTTGACGGCAGCGAAGTAACTTATCCTCGAAATGAATGGCTTAAATTAACCCTTGCCTATGCCATGAGCATTCATAAGTC
GCAAGGTAGTGAATTTCAGGTTGTTATTTTGCCAATCACCCGTCAAAGTGGACGACTGCTGCAACGCAATCTTATTTACA
CAGCTATCACACGTTCCAAAAGCAAACTCATTATGCTAGGAGAATTGGCCGCTTTTGATTATGCCATTCACAATGAGGGC
ATCAAGCGACAAACTTATTTGGTGGAACGCTTCCAAGAGCAAGAACCTGAAGAAAAAACTCAGACCAACCAAACACAAGC
TGACCTCGAAAAATCTGCAAATCACTTAAATGGTCAAGTAATCAGTCGTTCAAAAGCACATTCAACCAAGGCTAGCCTAA
CCAAGCAACAGCAGCCCCTTTGTGTCTTAACTCCTGATAATTTTCTTACCATTGATCCGATGATAGGGATTACAGAAGAC
GACATCTGCCACTTTTTTCAGAAAAATCCCTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-525)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.429

95.062

0.394

Multiple sequence alignment