Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JS609_RS08650 Genome accession   NZ_CP071043
Coordinates   1658074..1658853 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis isolate ELA2001105     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653074..1663853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS08630 (JS609_01704) trmFO 1653767..1655074 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JS609_RS08635 (JS609_01705) xerC 1655142..1656056 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  JS609_RS08640 (JS609_01706) clpQ 1656069..1656614 (+) 546 WP_076457719.1 ATP-dependent protease subunit ClpQ -
  JS609_RS08645 (JS609_01707) hslU 1656631..1658034 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  JS609_RS08650 (JS609_01708) codY 1658074..1658853 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JS609_RS08655 (JS609_01709) flgB 1659233..1659622 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  JS609_RS08660 (JS609_01710) flgC 1659622..1660074 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  JS609_RS08665 (JS609_01711) fliE 1660085..1660405 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  JS609_RS08670 (JS609_01712) fliF 1660451..1662061 (+) 1611 WP_213414488.1 flagellar basal-body MS-ring/collar protein FliF -
  JS609_RS08675 (JS609_01713) fliG 1662074..1663090 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  JS609_RS08680 (JS609_01714) fliH 1663083..1663835 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=542509 JS609_RS08650 WP_003220850.1 1658074..1658853(+) (codY) [Bacillus subtilis isolate ELA2001105]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=542509 JS609_RS08650 WP_003220850.1 1658074..1658853(+) (codY) [Bacillus subtilis isolate ELA2001105]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467