Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JS608_RS10390 Genome accession   NZ_CP071042
Coordinates   2061232..2062011 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2056232..2067011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS10370 (JS608_02068) trmFO 2056919..2058226 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JS608_RS10375 (JS608_02069) xerC 2058296..2059213 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  JS608_RS10380 (JS608_02070) hslV 2059229..2059774 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JS608_RS10385 (JS608_02071) hslU 2059791..2061194 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  JS608_RS10390 (JS608_02072) codY 2061232..2062011 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JS608_RS10395 (JS608_02073) flgB 2062365..2062754 (+) 390 WP_063174820.1 flagellar basal body rod protein FlgB -
  JS608_RS10400 (JS608_02074) flgC 2062754..2063206 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  JS608_RS10405 (JS608_02075) fliE 2063217..2063537 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JS608_RS10410 (JS608_02076) fliF 2063580..2065190 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  JS608_RS10415 (JS608_02077) fliG 2065203..2066219 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JS608_RS10420 (JS608_02078) fliH 2066212..2066967 (+) 756 WP_057080704.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=542442 JS608_RS10390 WP_003154263.1 2061232..2062011(+) (codY) [Bacillus amyloliquefaciens isolate ELA1901024]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=542442 JS608_RS10390 WP_003154263.1 2061232..2062011(+) (codY) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCAGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471