Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   JYG31_RS14535 Genome accession   NZ_CP070976
Coordinates   2801420..2803780 (-) Length   786 a.a.
NCBI ID   WP_213417786.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2796420..2808780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS14515 (JYG31_14515) - 2796498..2798051 (+) 1554 WP_213417784.1 SH3 domain-containing protein -
  JYG31_RS14520 (JYG31_14520) dtd 2798077..2798517 (-) 441 WP_010335121.1 D-aminoacyl-tRNA deacylase -
  JYG31_RS14525 (JYG31_14525) relA 2798530..2800734 (-) 2205 WP_213417785.1 GTP diphosphokinase -
  JYG31_RS14530 (JYG31_14530) - 2800902..2801414 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  JYG31_RS14535 (JYG31_14535) recJ 2801420..2803780 (-) 2361 WP_213417786.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  JYG31_RS14540 (JYG31_14540) - 2803847..2804182 (-) 336 WP_024122318.1 lipopolysaccharide assembly LapA domain-containing protein -
  JYG31_RS14545 (JYG31_14545) - 2804259..2804756 (-) 498 WP_024122319.1 cation:proton antiporter regulatory subunit -
  JYG31_RS14550 (JYG31_14550) secDF 2804916..2807129 (-) 2214 WP_101861157.1 protein translocase subunit SecDF -
  JYG31_RS14555 (JYG31_14555) - 2807167..2807463 (-) 297 WP_024122321.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88319.94 Da        Isoelectric Point: 4.9486

>NTDB_id=541751 JYG31_RS14535 WP_213417786.1 2801420..2803780(-) (recJ) [Bacillus halotolerans strain MBH1]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDKAENARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEESIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETAMLLQSEDLRHDVHVISSEDQAKAYELDGAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=541751 JYG31_RS14535 WP_213417786.1 2801420..2803780(-) (recJ) [Bacillus halotolerans strain MBH1]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATAAGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTAGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGCTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCGGAGCTTCCGGATGTCCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAACTGATTAAGCTCTCAGGCGGAGAAAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAACGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTGATGTCAGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCGATTGT
CGTGGCAAAAGCAGGATGGAATCCCGGAGTCGTCGGAATTGTTGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCCCCCTTCGGCATGCTGAAT
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTTAACAAAGGCGAGCTTGAGGAAAGTATAGTGCCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAATGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCGCAATGCTTCTTCAGTCTGAAGATCTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATATGAACTTGACGGTGCATATATTGTATTACTGGATTCACCGCCTTCGCTGGACATG
CTCGCACGTTTGTTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.639

100

0.936