Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JYG31_RS08720 Genome accession   NZ_CP070976
Coordinates   1696582..1697481 (+) Length   299 a.a.
NCBI ID   WP_024121389.1    Uniprot ID   A0A7G7U910
Organism   Bacillus halotolerans strain MBH1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1691582..1702481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS08700 (JYG31_08700) - 1692251..1693981 (+) 1731 WP_213418619.1 hypothetical protein -
  JYG31_RS08705 (JYG31_08705) - 1693978..1694259 (+) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  JYG31_RS08710 (JYG31_08710) sucC 1694433..1695590 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  JYG31_RS08715 (JYG31_08715) sucD 1695619..1696521 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  JYG31_RS08720 (JYG31_08720) dprA 1696582..1697481 (+) 900 WP_024121389.1 DNA-processing protein DprA Machinery gene
  JYG31_RS08725 (JYG31_08725) topA 1697672..1699747 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  JYG31_RS08730 (JYG31_08730) trmFO 1699823..1701130 (+) 1308 WP_101861212.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JYG31_RS08735 (JYG31_08735) xerC 1701198..1702112 (+) 915 WP_213418620.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32998.24 Da        Isoelectric Point: 9.3933

>NTDB_id=541728 JYG31_RS08720 WP_024121389.1 1696582..1697481(+) (dprA) [Bacillus halotolerans strain MBH1]
MDQAAACLITCRINQLLSPSLLLKWWKADPSLSLSNPSCALETASRGKVRAAALKNKIEEQYPKFQHLLSVYHQQGIKVI
PISSDQYPFWLKNIYDPPPVLFAKGDISLLSLGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=541728 JYG31_RS08720 WP_024121389.1 1696582..1697481(+) (dprA) [Bacillus halotolerans strain MBH1]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCATTGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAATTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAAACATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCTAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTAGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCGGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7U910

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829