Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LLJ53_RS28365 Genome accession   NZ_CP086213
Coordinates   5969626..5970051 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain Pa3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5964626..5975051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJ53_RS28350 (LLJ53_28345) pilX 5965190..5965777 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  LLJ53_RS28355 (LLJ53_28350) pilY1 5965789..5969280 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -
  LLJ53_RS28360 (LLJ53_28355) pilY2 5969282..5969629 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  LLJ53_RS28365 (LLJ53_28360) comF 5969626..5970051 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LLJ53_RS28370 (LLJ53_28365) ispH 5970098..5971042 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LLJ53_RS28375 (LLJ53_28370) fkpB 5971128..5971568 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LLJ53_RS28380 (LLJ53_28375) lspA 5971561..5972070 (-) 510 WP_003102615.1 signal peptidase II -
  LLJ53_RS28385 (LLJ53_28380) ileS 5972063..5974894 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=541375 LLJ53_RS28365 WP_003094721.1 5969626..5970051(+) (comF) [Pseudomonas aeruginosa strain Pa3]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=541375 LLJ53_RS28365 WP_003094721.1 5969626..5970051(+) (comF) [Pseudomonas aeruginosa strain Pa3]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383