Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JWH23_RS05735 Genome accession   NZ_CP070896
Coordinates   1014012..1014395 (-) Length   127 a.a.
NCBI ID   WP_277408333.1    Uniprot ID   -
Organism   Lacrimispora xylanisolvens strain ASCUSBR21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009012..1019395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWH23_RS05705 - 1009845..1010186 (+) 342 WP_277408329.1 GIY-YIG nuclease family protein -
  JWH23_RS05710 - 1010189..1010461 (+) 273 WP_277408330.1 DUF2087 domain-containing protein -
  JWH23_RS05715 - 1010479..1011147 (+) 669 WP_277408331.1 chloramphenicol acetyltransferase -
  JWH23_RS05720 - 1011144..1012118 (-) 975 WP_277408332.1 hypothetical protein -
  JWH23_RS05725 - 1012266..1013780 (-) 1515 WP_349773172.1 ABC transporter ATP-binding protein -
  JWH23_RS05730 - 1013713..1014009 (-) 297 WP_277410024.1 hypothetical protein -
  JWH23_RS05735 rcrP 1014012..1014395 (-) 384 WP_277408333.1 ABC transporter ATP-binding protein Regulator
  JWH23_RS05740 - 1014379..1015770 (-) 1392 WP_277408334.1 ABC transporter ATP-binding protein -
  JWH23_RS05745 - 1015888..1016712 (+) 825 WP_277408335.1 MerR family transcriptional regulator -
  JWH23_RS05750 - 1016757..1017377 (-) 621 WP_277408336.1 hypothetical protein -
  JWH23_RS05755 - 1017361..1017969 (-) 609 WP_277408337.1 RNA polymerase sigma factor -
  JWH23_RS05760 - 1018004..1018495 (-) 492 WP_277408338.1 DUF4367 domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14100.28 Da        Isoelectric Point: 8.8645

>NTDB_id=541274 JWH23_RS05735 WP_277408333.1 1014012..1014395(-) (rcrP) [Lacrimispora xylanisolvens strain ASCUSBR21]
MEKGYDSFVAQGGTNLSGGQKQRIAIARALVRKPEIYVFDDSFSALDYKTDALLRKALRQEIKNKEASLIIVAQRISTIL
DADRIIVLDQGEIAGIGTHQELMKNCLAYKQIAASQLSESQLKKEMV

Nucleotide


Download         Length: 384 bp        

>NTDB_id=541274 JWH23_RS05735 WP_277408333.1 1014012..1014395(-) (rcrP) [Lacrimispora xylanisolvens strain ASCUSBR21]
ATGGAAAAGGGATATGATTCTTTTGTAGCTCAGGGAGGAACCAACCTCTCAGGAGGCCAGAAGCAGCGTATTGCAATTGC
CAGAGCGTTGGTACGAAAGCCGGAAATTTATGTATTTGATGATAGTTTTTCTGCTCTTGACTATAAAACTGATGCATTAC
TGAGAAAAGCTCTCCGACAGGAAATTAAAAATAAAGAGGCTTCGCTTATCATTGTTGCACAGCGGATCAGCACCATTCTT
GATGCAGACAGAATTATTGTTCTTGATCAGGGAGAAATTGCAGGAATTGGTACCCATCAGGAACTGATGAAGAATTGCCT
CGCATATAAACAGATTGCGGCATCCCAGTTAAGTGAGTCGCAGCTTAAAAAGGAAATGGTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(6-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.854

96.85

0.638