Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JW886_RS01780 Genome accession   NZ_CP070872
Coordinates   343085..343873 (+) Length   262 a.a.
NCBI ID   WP_075525153.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 338085..348873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS01755 (JW886_01755) - 338464..339267 (+) 804 WP_205872149.1 DNA/RNA non-specific endonuclease -
  JW886_RS01760 (JW886_01760) - 339393..339602 (+) 210 WP_075525149.1 hypothetical protein -
  JW886_RS01765 (JW886_01765) - 339615..339854 (+) 240 WP_075525150.1 hypothetical protein -
  JW886_RS01770 (JW886_01770) - 340048..341631 (+) 1584 WP_205872150.1 glycosyltransferase -
  JW886_RS01775 (JW886_01775) - 341716..342930 (+) 1215 WP_200406947.1 pyridoxal phosphate-dependent aminotransferase -
  JW886_RS01780 (JW886_01780) codY 343085..343873 (+) 789 WP_075525153.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JW886_RS01785 (JW886_01785) gatC 344127..344432 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  JW886_RS01790 (JW886_01790) gatA 344432..345892 (+) 1461 WP_205872151.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  JW886_RS01795 (JW886_01795) - 345896..346498 (+) 603 WP_205872152.1 NUDIX hydrolase -
  JW886_RS01800 (JW886_01800) gatB 346538..347971 (+) 1434 WP_205872153.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29197.60 Da        Isoelectric Point: 4.5357

>NTDB_id=541196 JW886_RS01780 WP_075525153.1 343085..343873(+) (codY) [Lactococcus taiwanensis strain K_LL004]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNERVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDKPLAIFPEEVLENFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLILVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNSGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=541196 JW886_RS01780 WP_075525153.1 343085..343873(+) (codY) [Lactococcus taiwanensis strain K_LL004]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGCGTGACCGATTTGCAACAGGAGCTTCC
ATACAATAGCATGACGGAACGCTTAGCAAATGTCATTGACTGTAATGCCTGCGTGATTAATACGAAAGGTGAGTTACTTG
GTTACTCACTTCCTTACAATACGAATAATGAACGCGTAGATCAATTTTTCTATGATCGTAAATTACCAGATGAATATGTT
CGTGCTGCGGTTCGTATCTACGACACTATGGCTAACGTACCTGTAGACAAACCTTTGGCAATCTTCCCAGAAGAAGTTTT
AGAAAACTTTCCTAAGGGTGTGACAACTTTGGCGCCTATTTATGGTTCAGGCATGCGTCTTGGAACCTTTATTATGTGGC
GTGAAGACGGAGAATTTACGGATGATGACCTTATTTTGGTCGAACTGGCTACCACTGTAATTGGGGTGCAACTTTCAAAC
CTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGATACCATGGCGACGATGGCGGTAAACACACTTTCTTACTCAGA
AATGAAAGCCGTGAAAGCCATTATTGAAGAACTTGATGGAGAAGAAGGCCACGTTATTGCCTCAGTCATTGCTGATAAAA
TCGGAATTACACGCTCAGTGATTGTTAATGCTTTACGCAAACTTGAATCTGCAGGTGTGATTGAATCTCGTTCACTTGGT
ATGAAAGGGACTTATCTGAAAGTCCTTAACTCAGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

97.328

100

0.973
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462