Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JW980_RS01760 Genome accession   NZ_CP070866
Coordinates   364388..364828 (+) Length   146 a.a.
NCBI ID   WP_205667534.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359388..369828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS01745 (JW980_01745) - 359551..360234 (+) 684 WP_205667531.1 pilus assembly protein PilX -
  JW980_RS01750 (JW980_01750) - 360259..363867 (+) 3609 WP_205667532.1 pilus assembly protein PilC -
  JW980_RS01755 (JW980_01755) - 363877..364401 (+) 525 WP_205667533.1 type IV pilin protein -
  JW980_RS01760 (JW980_01760) comF 364388..364828 (+) 441 WP_205667534.1 type IV pilin protein Machinery gene
  JW980_RS01765 (JW980_01765) rpsP 364975..365232 (+) 258 WP_205667535.1 30S ribosomal protein S16 -
  JW980_RS01770 (JW980_01770) rimM 365261..365809 (+) 549 WP_004978035.1 ribosome maturation factor RimM -
  JW980_RS01775 (JW980_01775) trmD 365837..366577 (+) 741 WP_005401335.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JW980_RS01780 (JW980_01780) rplS 366717..367091 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  JW980_RS01785 (JW980_01785) - 367151..368122 (-) 972 WP_205667536.1 esterase/lipase family protein -
  JW980_RS01790 (JW980_01790) - 368295..369260 (-) 966 WP_205667537.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16113.88 Da        Isoelectric Point: 4.2075

>NTDB_id=541138 JW980_RS01760 WP_205667534.1 364388..364828(+) (comF) [Acinetobacter johnsonii strain XY27]
MRNGNYTGFTLIELMIVVAIIAILAAIAYPSYTSYRVKTNRVDVQTQMMNIAQRLQSYKSVNHSYTGATLAGLGISSTYP
DSGEYNLDLTIDGDNQGYLLKAEPNSSTIQESNGEICLNQEGFKFWEKGSDCDADDLTNESSWDGK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=541138 JW980_RS01760 WP_205667534.1 364388..364828(+) (comF) [Acinetobacter johnsonii strain XY27]
ATGAGAAATGGTAACTATACTGGCTTCACATTAATTGAACTTATGATTGTTGTTGCGATTATTGCAATTCTAGCTGCTAT
TGCTTATCCATCTTATACATCTTATAGGGTGAAGACCAATCGTGTGGATGTTCAAACCCAAATGATGAATATTGCTCAAC
GTTTACAGAGTTATAAATCCGTAAATCATAGTTATACTGGAGCAACTTTAGCAGGTCTTGGCATTTCATCTACCTATCCG
GACAGCGGTGAATATAATTTAGATTTAACGATTGATGGGGACAACCAAGGGTATTTATTAAAAGCAGAGCCAAATAGTTC
GACAATTCAAGAAAGCAATGGTGAAATCTGTTTAAATCAAGAAGGGTTTAAATTCTGGGAGAAAGGCAGTGATTGTGATG
CTGACGACTTAACGAACGAATCCTCTTGGGACGGCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

58.865

96.575

0.568
  pilE Acinetobacter baumannii D1279779

50.714

95.89

0.486