Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A0J47_RS01410 Genome accession   NZ_CP070624
Coordinates   292429..293523 (-) Length   364 a.a.
NCBI ID   WP_068945799.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain RM-71     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 287429..298523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0J47_RS01380 (A0J47_001380) hemF 287943..288854 (-) 912 WP_068945803.1 oxygen-dependent coproporphyrinogen oxidase -
  A0J47_RS01385 (A0J47_001385) - 288858..289415 (-) 558 WP_068945802.1 L-threonylcarbamoyladenylate synthase -
  A0J47_RS01390 (A0J47_001390) purE 289608..290093 (+) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  A0J47_RS01395 (A0J47_001395) - 290096..291217 (+) 1122 WP_068945801.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  A0J47_RS01400 (A0J47_001400) - 291285..291842 (-) 558 WP_068945800.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  A0J47_RS01405 (A0J47_001405) - 291953..292426 (-) 474 WP_036764597.1 DUF494 family protein -
  A0J47_RS01410 (A0J47_001410) dprA 292429..293523 (-) 1095 WP_068945799.1 DNA-processing protein DprA Machinery gene
  A0J47_RS01415 (A0J47_001415) - 293526..294584 (-) 1059 WP_068945798.1 LysM peptidoglycan-binding domain-containing protein -
  A0J47_RS01420 (A0J47_001420) def 294873..295385 (+) 513 WP_068945797.1 peptide deformylase -
  A0J47_RS01425 (A0J47_001425) fmt 295398..296342 (+) 945 WP_068945796.1 methionyl-tRNA formyltransferase -
  A0J47_RS01430 (A0J47_001430) rsmB 296481..297758 (+) 1278 WP_065171011.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39192.26 Da        Isoelectric Point: 6.4262

>NTDB_id=540927 A0J47_RS01410 WP_068945799.1 292429..293523(-) (dprA) [Photobacterium damselae subsp. damselae strain RM-71]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPVSRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=540927 A0J47_RS01410 WP_068945799.1 292429..293523(-) (dprA) [Photobacterium damselae subsp. damselae strain RM-71]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
CGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTGGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCCGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
CATTGTTGAGCAGGGCGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGAGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGTCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTGTTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.923

99.725

0.558
  dprA Vibrio cholerae strain A1552

51.323

100

0.533
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.631

100

0.442
  dprA Haemophilus influenzae Rd KW20

46.018

93.132

0.429
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368