Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JTI59_RS06960 Genome accession   NZ_CP070511
Coordinates   1384929..1387283 (+) Length   784 a.a.
NCBI ID   WP_205424558.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379929..1392283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS06935 (JTI59_06935) - 1380691..1381347 (+) 657 WP_015864608.1 YczE/YyaS/YitT family protein -
  JTI59_RS06940 (JTI59_06940) cymR 1381366..1381782 (+) 417 WP_015864607.1 cysteine metabolism transcriptional regulator CymR -
  JTI59_RS06945 (JTI59_06945) - 1381803..1382948 (+) 1146 WP_015864606.1 cysteine desulfurase family protein -
  JTI59_RS06950 (JTI59_06950) mnmA 1382966..1384081 (+) 1116 WP_015864605.1 tRNA 2-thiouridine(34) synthase MnmA -
  JTI59_RS06955 (JTI59_06955) - 1384250..1384918 (+) 669 WP_015864604.1 tetratricopeptide repeat protein -
  JTI59_RS06960 (JTI59_06960) recD2 1384929..1387283 (+) 2355 WP_205424558.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JTI59_RS06965 (JTI59_06965) - 1387319..1387792 (+) 474 WP_062677180.1 PRC-barrel domain-containing protein -
  JTI59_RS06970 (JTI59_06970) - 1387808..1387999 (+) 192 WP_015864601.1 hypothetical protein -
  JTI59_RS06975 (JTI59_06975) - 1388012..1388146 (+) 135 WP_015864600.1 YrzQ family protein -
  JTI59_RS06980 (JTI59_06980) - 1388249..1389310 (+) 1062 WP_062753000.1 AI-2E family transporter -
  JTI59_RS06985 (JTI59_06985) alaS 1389639..1392272 (+) 2634 WP_205424674.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87861.50 Da        Isoelectric Point: 5.1452

>NTDB_id=540416 JTI59_RS06960 WP_205424558.1 1384929..1387283(+) (recD2) [Parageobacillus toebii strain NEB718]
MQQQESFVLGETSFIKGSYISTIFHNEANLYSVVRVRVVETNEAYDEQEVVVTGYFPKMNEHDTYIFYGKFHDHPKFGRQ
YVVEHFRKQFPNTKDGIIHYLSSDLFKGIGKKTAKAIVEALGENAISKILADPSVLDDVPKLSKQKAKELYDTLRAHEGL
EQTMIALSQFGFGPQLSMKIYQVYQDETLSVIQQNPYQLVEDVEGIGFGRADELGYRLGISGSHPARIRAACLFVLERDC
LQEGHVYVTKEQLMTSAKQLLEAKRNEAISEEAIEQMLLMLAEEGKLINEEEKFYIPSLYFAEKGIVTNVKRLLQQTEAV
MTFPESEFLLALGRLEERLSVQYAPLQKEAIRQAISSPLFILTGGPGTGKTTVIKGIVEIFADLHGLSLDPKDYTKDHPF
PILLAAPTGRAAKRMSEATGLPAVTIHRLLGWNGAEGFTHDEDEPIRGKLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLQAGVIPTIRLTEVYRQAEGSSIIELAHQMKNGVIPQDLTAQKADRSFIRCQTGQIAEVVRQ
IADNARRKGFAVKDIQVLAPMYRGPAGIDRLNQVLQDLFNPKSEKKRELSVGDVVYRVGDKVLQLVNQPDDNVFNGDIGE
IVAIFYAKENTEKQDLVVVSFDGIEVTYSRQDLSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFKLGIARSDDGARQTTLTEKLQRSLAPITEGELPMEDANIGMENVSPYDFMND

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=540416 JTI59_RS06960 WP_205424558.1 1384929..1387283(+) (recD2) [Parageobacillus toebii strain NEB718]
TTGCAGCAACAAGAATCGTTTGTTTTAGGGGAAACATCGTTTATTAAAGGGTCATATATTTCTACGATTTTTCATAATGA
AGCAAATTTATATTCCGTCGTTCGCGTTCGAGTGGTGGAAACGAACGAAGCATATGATGAACAAGAAGTTGTTGTAACTG
GATATTTCCCCAAAATGAATGAGCATGATACGTATATTTTTTATGGAAAATTTCACGACCACCCGAAGTTCGGGCGGCAA
TATGTTGTGGAACATTTTCGGAAACAATTTCCAAACACAAAAGACGGAATCATTCATTACTTATCAAGCGATTTGTTTAA
AGGAATTGGGAAAAAAACGGCAAAAGCGATCGTCGAAGCGCTCGGCGAAAATGCTATTTCGAAAATTTTAGCGGATCCTA
GCGTATTGGACGATGTTCCGAAATTGTCAAAACAAAAAGCAAAAGAGTTGTATGATACGTTGCGTGCCCATGAAGGGTTA
GAACAAACGATGATTGCTCTTTCTCAATTTGGTTTTGGTCCGCAATTGTCGATGAAAATTTACCAAGTATATCAAGATGA
AACCCTTTCTGTTATCCAGCAAAATCCATACCAGCTTGTCGAAGATGTGGAAGGGATCGGATTTGGCCGCGCCGATGAAT
TAGGATACCGTCTTGGCATTTCCGGCAGCCATCCTGCGCGCATTCGTGCAGCTTGTTTGTTTGTGTTAGAGCGGGATTGT
CTTCAAGAAGGGCATGTTTATGTGACGAAAGAACAGCTTATGACAAGCGCGAAACAGCTTTTGGAGGCGAAACGGAACGA
AGCGATCAGTGAGGAAGCCATCGAGCAAATGCTGTTAATGCTTGCGGAGGAAGGAAAATTAATCAATGAAGAGGAAAAAT
TTTATATTCCATCCCTTTATTTTGCCGAAAAAGGAATCGTAACCAATGTAAAACGTCTTTTGCAACAAACAGAAGCAGTG
ATGACGTTTCCGGAATCGGAATTTTTATTAGCGCTCGGAAGGCTGGAGGAACGTTTATCCGTTCAATATGCTCCATTACA
AAAAGAAGCCATTCGACAAGCGATTTCTTCCCCGTTATTTATTTTGACGGGTGGTCCTGGCACAGGAAAAACGACGGTGA
TTAAAGGAATCGTAGAAATTTTCGCTGATTTGCACGGTCTTTCTCTCGATCCGAAAGATTACACGAAAGATCACCCATTT
CCGATTTTGCTTGCCGCGCCGACAGGAAGGGCGGCAAAGAGAATGAGTGAAGCAACGGGATTGCCTGCTGTTACGATTCA
TCGTTTGCTTGGCTGGAATGGCGCGGAAGGCTTTACACATGATGAGGATGAGCCGATTCGCGGGAAGCTCTTAATTGTTG
ACGAAATGTCCATGGTCGATACGTGGCTGGCCAATCAGCTATTTAAGTCGATTCCGGACGGCATGCAAGTGATTCTCGTC
GGCGACGAAGATCAGCTGCCATCCGTTGGACCTGGACAAGTATTAAAGGATTTATTACAAGCGGGTGTCATCCCGACCAT
TCGGCTAACAGAAGTATATCGGCAAGCGGAAGGTTCATCGATTATTGAATTGGCGCACCAAATGAAAAATGGTGTCATCC
CCCAGGATTTAACAGCACAAAAGGCGGATCGCTCATTCATTCGCTGTCAGACAGGGCAAATTGCTGAAGTCGTCCGGCAA
ATTGCTGATAATGCGCGAAGAAAAGGCTTTGCAGTAAAAGATATTCAAGTGCTTGCGCCAATGTATCGCGGTCCTGCCGG
AATTGACCGCCTTAATCAAGTGTTGCAAGATTTGTTTAATCCAAAATCAGAGAAAAAGCGGGAACTTTCTGTCGGCGATG
TAGTGTATCGGGTTGGCGATAAGGTGCTGCAGCTTGTCAATCAGCCTGATGACAATGTATTTAATGGTGATATCGGTGAA
ATTGTCGCCATTTTTTACGCAAAAGAAAATACGGAAAAACAAGATTTAGTCGTTGTTTCTTTTGATGGCATTGAGGTAAC
GTATTCGCGGCAAGATTTGTCGCAAATTACACATGCGTATTGTTGTTCCATTCATAAATCGCAAGGAAGCGAATTTCCAA
TTGTCATTTTGCCGGTTGTAAAAAGCTATTATCGCATGTTAAAGAGAAATTTATTATATACTGCGGTGACAAGAAGCAAA
CAGTTTTTAATTTTATGTGGGGAAGAAGAAGCGTTTAAGTTAGGCATTGCCCGCAGTGATGATGGGGCTCGGCAAACAAC
GTTAACGGAAAAGTTGCAAAGATCTCTTGCACCGATTACAGAAGGAGAACTGCCGATGGAGGATGCGAACATCGGAATGG
AAAACGTTTCACCGTATGATTTTATGAACGACTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.396

100

0.643