Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   JTI59_RS06870 Genome accession   NZ_CP070511
Coordinates   1363655..1366012 (+) Length   785 a.a.
NCBI ID   WP_205424556.1    Uniprot ID   -
Organism   Parageobacillus toebii strain NEB718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1358655..1371012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS06855 (JTI59_06855) spoVB 1359068..1360630 (-) 1563 WP_089097947.1 stage V sporulation protein B -
  JTI59_RS06860 (JTI59_06860) - 1360734..1361030 (+) 297 WP_205424555.1 post-transcriptional regulator -
  JTI59_RS06865 (JTI59_06865) secDF 1361227..1363479 (+) 2253 WP_062753018.1 protein translocase subunit SecDF -
  JTI59_RS06870 (JTI59_06870) recJ 1363655..1366012 (+) 2358 WP_205424556.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  JTI59_RS06875 (JTI59_06875) - 1366012..1366524 (+) 513 WP_015864619.1 adenine phosphoribosyltransferase -
  JTI59_RS06880 (JTI59_06880) - 1366722..1368920 (+) 2199 WP_015864618.1 RelA/SpoT family protein -
  JTI59_RS06885 (JTI59_06885) dtd 1368935..1369393 (+) 459 WP_015864617.1 D-aminoacyl-tRNA deacylase -
  JTI59_RS06890 (JTI59_06890) - 1369504..1369680 (+) 177 WP_015864616.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88098.35 Da        Isoelectric Point: 5.4835

>NTDB_id=540415 JTI59_RS06870 WP_205424556.1 1363655..1366012(+) (recJ) [Parageobacillus toebii strain NEB718]
MLIAKTRWDVKRPDENIVTHLVEQSHMDPLIAKLLVHRGVRTVEEANAFLYPLKQPFHDPFLLDGMERAIERIQRAIQHG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNENAFRWAKEQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPALPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGDVPRHFLDVVAIGTIADLVSLTGENRLL
VAQGLEQLRNTKRIGLRALCKQCGIEAKEINEQTVGFVIAPRMNAVGRLGEATPAVRLLMTEKEEEAQRLAKEMDDLNRE
RQQLVAKIAEEAAQIVNEQFPPSENKVLVIAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDSEKGIAKGSARSIHGFDMF
SSLSTCRDILPHFGGHPMAAGMTLSVDHIDELRQRLNALADDMLTADDFTPITPIDAVCSVSDLTLSVAEQLEKFAPFGV
DNAKPLFLMENVSVETIRRIGADQSHLKAVFAQNGAAIDSVGFGFGYLCDEIAPDAKVSVVGELMVNEWNNLRKPQLMIF
DVAVHECQLFDIRGMRDVRPLIASLPKDKRMLIMFREGTADALGLEAYKEEIYYTASVEEASRLCLDNRYVVLLDMPTSL
EIIKMLLRSSLPARIYALFYQRETHFFRTLPTRDHFKWFYAFLRKKGVFNLAKYGGELARARGWTEETVRFMAKVFLELE
FITQQDGVVSLVPQPAKRDLSESPTYRFKQAQFELENLFLYSTYEQLKRCLFEMKGSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=540415 JTI59_RS06870 WP_205424556.1 1363655..1366012(+) (recJ) [Parageobacillus toebii strain NEB718]
ATGTTAATAGCAAAAACACGTTGGGATGTGAAACGTCCTGACGAAAATATCGTAACGCATTTAGTAGAACAGTCGCATAT
GGATCCGTTGATTGCGAAGCTTCTTGTTCATCGTGGAGTTCGTACGGTAGAAGAGGCGAACGCGTTTTTATATCCGCTGA
AACAACCGTTTCATGATCCGTTTTTGCTAGATGGGATGGAACGGGCAATTGAGCGGATTCAACGGGCGATACAACATGGA
GAGCATATTTTGGTATATGGTGATTATGATGCTGACGGCGTAAGCAGCACGACGGTAATGGTTAGTGCTCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAATCGATTTACCGAAGGATACGGTCCGAATGAGAATGCATTTCGTTGGGCAA
AGGAGCAAGGATTTTCTCTGATTATCACGGTCGATAACGGCATTGCTGCAGTGAAGGAAGTGGCGCTTGCCAATGAGCTT
GGTATGGATGTCATTATTACAGATCATCATGAAGTGGGACCGGCGTTGCCGGAAGCATATGAAATTATTCATCCGAAAAA
GCCCGGCAGTACATACCCGTTTCGTGAATTAGCAGGCGTCGGAGTAGCATTTAAAGTTGCCCACGCATTGCTTGGGGATG
TGCCGCGTCATTTTTTAGATGTCGTAGCAATTGGAACGATCGCTGATCTCGTTTCCCTTACCGGAGAAAATCGTCTGTTG
GTTGCACAAGGGCTTGAACAGTTGCGAAATACGAAACGTATTGGATTGCGTGCATTGTGTAAACAATGTGGAATAGAAGC
AAAAGAAATTAACGAACAGACGGTTGGGTTCGTTATTGCGCCGCGGATGAATGCAGTTGGCCGGTTGGGAGAAGCAACCC
CTGCTGTCAGATTGTTAATGACGGAGAAAGAAGAGGAAGCACAAAGACTTGCGAAAGAAATGGATGATTTAAATCGGGAG
CGGCAGCAGCTTGTCGCGAAAATAGCGGAGGAAGCGGCACAAATAGTAAATGAACAATTTCCGCCATCCGAAAATAAAGT
GCTTGTGATCGCAAAAGAAGGATGGAATCCAGGGGTCATTGGCATTGTTGCTTCCCGATTGGTTGAACAATTTTACCGTC
CGACGATTGTTTTGAGCATTGATTCCGAGAAAGGAATTGCAAAAGGTTCGGCGCGAAGCATTCATGGGTTTGATATGTTT
TCAAGCTTATCGACATGTCGCGATATTTTGCCACATTTTGGCGGGCATCCAATGGCGGCGGGAATGACATTATCGGTTGA
TCATATTGATGAATTGCGTCAGCGTCTCAACGCACTTGCCGATGATATGTTGACAGCCGATGATTTTACCCCAATTACAC
CGATTGATGCAGTTTGTTCCGTATCTGATTTAACGCTTTCGGTAGCCGAACAGCTTGAAAAGTTTGCTCCGTTTGGTGTA
GATAACGCAAAGCCTCTTTTTTTAATGGAAAATGTATCAGTGGAAACGATCCGACGCATCGGGGCTGACCAGTCGCATTT
AAAGGCTGTTTTCGCCCAAAATGGCGCTGCGATTGATAGCGTCGGGTTCGGCTTTGGTTATTTGTGCGATGAAATCGCTC
CAGATGCGAAAGTGTCCGTGGTTGGCGAGTTAATGGTGAATGAGTGGAACAATCTTCGCAAACCGCAGCTAATGATTTTC
GATGTAGCGGTGCATGAATGTCAATTGTTTGATATTCGCGGTATGCGCGATGTACGGCCACTGATTGCGTCTCTTCCGAA
AGATAAGCGGATGTTGATTATGTTTCGGGAAGGTACGGCAGATGCATTAGGGCTTGAAGCATATAAAGAAGAGATTTACT
ACACGGCCTCAGTGGAAGAAGCGTCGCGGCTTTGTTTAGATAACCGGTACGTTGTGCTGTTAGATATGCCAACGTCTTTG
GAAATCATAAAAATGTTGTTACGTTCTAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
TCGCACGTTGCCAACGCGTGATCATTTTAAATGGTTTTATGCGTTTTTGAGAAAAAAAGGTGTGTTTAACTTGGCTAAGT
ATGGTGGCGAGTTAGCACGTGCGCGTGGATGGACAGAAGAAACTGTCCGGTTTATGGCAAAAGTATTTCTCGAGCTGGAA
TTTATTACGCAACAGGATGGAGTTGTATCGCTTGTTCCTCAACCGGCTAAACGCGATTTAAGCGAATCGCCGACTTATCG
CTTTAAACAAGCTCAGTTTGAGCTTGAAAATCTATTTTTGTATTCAACATATGAACAATTAAAGCGTTGTCTTTTCGAAA
TGAAAGGTTCGCAAACATACGAGGAGGCAAATGTGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-559)

DHHA1 domain (DHHA1)

(302-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.257

99.745

0.531