Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   LL045_RS10920 Genome accession   NZ_CP086083
Coordinates   2234446..2235384 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229446..2240384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS10895 (LL045_10865) frr 2229562..2230119 (-) 558 WP_004254618.1 ribosome recycling factor -
  LL045_RS10900 (LL045_10870) pyrH 2230332..2231048 (-) 717 WP_021464089.1 UMP kinase -
  LL045_RS10905 (LL045_10875) - 2231133..2231585 (-) 453 WP_195362782.1 hypothetical protein -
  LL045_RS10910 (LL045_10880) - 2231719..2232906 (-) 1188 WP_015427114.1 acetate kinase -
  LL045_RS10915 (LL045_10885) - 2233063..2234250 (-) 1188 WP_394530189.1 acetate kinase -
  LL045_RS10920 (LL045_10890) comGH 2234446..2235384 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  LL045_RS10925 (LL045_10895) - 2235472..2235723 (-) 252 WP_038602250.1 DUF3165 family protein -
  LL045_RS10930 (LL045_10900) typA 2235824..2237656 (-) 1833 WP_021723473.1 translational GTPase TypA -
  LL045_RS10935 - 2237844..2238302 (-) 459 WP_195927836.1 hypothetical protein -
  LL045_RS10940 (LL045_10910) - 2238304..2238714 (-) 411 WP_230315099.1 hypothetical protein -
  LL045_RS10945 (LL045_10915) - 2238721..2239347 (-) 627 WP_394530191.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=540219 LL045_RS10920 WP_012898520.1 2234446..2235384(-) (comGH) [Lactococcus lactis subsp. lactis strain EIP20A]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=540219 LL045_RS10920 WP_012898520.1 2234446..2235384(-) (comGH) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGATCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGTTCACAA
GTCGCACCACTTCAACCCAATCATGCTATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTGGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGATGTTGTTGTTAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCTTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

48.882

100

0.49
  comGH Streptococcus mutans UA159

48.562

100

0.487