Detailed information NTG0540203

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: LL045_RS09055
• Genome accession: NZ_CP086083
• Coordinates: 1870405..1872909 (-)
• Length: 834 a.a.
• NCBI ID: WP_394530092.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain EIP20A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1865405..1877909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL045_RS09025 (LL045_09010)	-	1865716..1865925 (-)	210	WP_394530088.1	helix-turn-helix transcriptional regulator	-
LL045_RS09030 (LL045_09015)	-	1866044..1866751 (+)	708	WP_394530089.1	helix-turn-helix domain-containing protein	-
LL045_RS09035 (LL045_09020)	-	1866832..1868043 (+)	1212	WP_394530090.1	tyrosine-type recombinase/integrase	-
LL045_RS09040 (LL045_09025)	-	1868168..1869079 (-)	912	WP_104141504.1	diacylglycerol kinase family protein	-
LL045_RS09045 (LL045_09030)	-	1869235..1869747 (-)	513	WP_003132795.1	HD domain-containing protein	-
LL045_RS09050 (LL045_09035)	rpsT	1870079..1870312 (+)	234	WP_038601748.1	30S ribosomal protein S20	-
LL045_RS09055 (LL045_09040)	recD/recD2/recDB	1870405..1872909 (-)	2505	WP_394530092.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LL045_RS09060 (LL045_09045)	-	1872906..1873499 (-)	594	WP_098393308.1	histidine phosphatase family protein	-
LL045_RS09065 (LL045_09050)	pheA	1873502..1874341 (-)	840	WP_014570689.1	prephenate dehydratase	-
LL045_RS09070 (LL045_09055)	-	1874343..1874831 (-)	489	WP_038601758.1	shikimate kinase	-
LL045_RS09075 (LL045_09060)	aroA	1874855..1876147 (-)	1293	WP_118263458.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
LL045_RS09080 (LL045_09065)	-	1876268..1877332 (-)	1065	WP_038601764.1	prephenate dehydrogenase	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 92999.43 Da
• Isoelectric Point: 4.5229

>NTDB_id=540203 LL045_RS09055 WP_394530092.1 1870405..1872909(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain EIP20A]
MIEKTYFTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKITFQIYELYKEETIEKIEENPYQLVEDVKGVGFKTADKIASSLGIEADSPNRFRAALMHEVNTHSQSTGDTYIEA
KNLLEMTIDLLEEARNVEVNPSAVAEEINGLIVDGKVQQEGTKIFENSLYFAEDGIRKSLTALTNRSGKDFADEKLLTVL
AEVEKDLEITYDDLQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLHQLDLDPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDALGNELSGALLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPSDFTAKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGMPGINAMNVLLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
ELVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTYLIERFMGENPAAKNLSVEIVSEKVTDKKERSNKEKKLATPVELQGQNHSVSKKMPAKVEEISLFEDEEI
ETLDQGSLTEALILSGNFDPLIGLTQQDFAIFNK

Nucleotide

• Length: 2505 bp

>NTDB_id=540203 LL045_RS09055 WP_394530092.1 1870405..1872909(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGATTGAAAAAACTTATTTTACTGGTTCGATTGAGGCAATATTTTTCTCCAATCCCAGTAATTTTTATAAAGTTCTACT
CATTGAAATTGATGAAACTAATGCTGAATATGATGATTTTGAAATTGTGGTTAACGGAACAATTGGAGATGTGGTTGAAG
GAGATTCTTATACATTTTATGGTCAATTGACGCAGCATCCTAAGTATGGGGAACAATTACAGGTCAGTCAATATGAAAAA
GCAGTGCCGACTTCTGGTGCTGGTTTAGTTAAATATTTTTCTTCAGATAAATTTCCTGGAATTGGTAAGAAAACGGCAGA
AAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCAATTTTAGAAGCGCCGGAAAAATTGGATGGTCTATTGACCC
TAGCCAGAAAAAATTCATTTATCAAACGATTACGTGAGAACCATGGAATGGAAAAAGTGCTGACCAAGCTTGCAGAATAC
GGCTTACCAAGCAAAATCACTTTTCAAATTTATGAACTTTATAAAGAAGAAACGATTGAAAAAATTGAGGAAAATCCTTA
TCAACTTGTGGAAGATGTTAAGGGAGTTGGTTTTAAAACAGCTGATAAGATTGCAAGTAGTTTAGGAATTGAAGCGGATA
GCCCTAATCGATTTCGAGCGGCATTGATGCATGAGGTCAATACGCATTCGCAATCAACAGGTGATACTTACATTGAAGCC
AAAAATTTACTTGAGATGACGATAGATTTACTTGAAGAAGCTCGTAATGTCGAGGTCAATCCGTCTGCTGTTGCGGAGGA
AATTAATGGTTTAATTGTTGATGGAAAAGTGCAACAAGAAGGAACAAAAATATTTGAGAATTCTTTGTACTTTGCTGAGG
ACGGGATTCGGAAATCACTGACAGCATTAACTAATCGTTCTGGTAAAGATTTTGCTGATGAAAAGTTACTGACAGTTTTG
GCTGAAGTTGAAAAAGATTTAGAAATTACTTATGATGATTTGCAAAAGCAAGCCATTATTGGTGCAATGAATCAGCAATT
TTTCATTTTGACTGGTGGACCAGGAACTGGTAAAACAACAATTATTAATGGTTTTATTGAAACTTATGCCCGTCTTCACC
AGCTAGATTTGGACCCAGACCATTATAATGATGATGTCTTTCCTATATTACTGGCAGCACCGACTGGTCGGGCTTCAAGA
CGGATGAATGAGTTGACTGGTCTTCCAGCAGCAACGATTCACCGCCATTTGGGTTTGGGACAAGATGAAGCAGAAGATGC
TCTTGGAAATGAATTGTCTGGTGCTCTTTTGATTGTTGACGAATTTTCTATGGTTGATACTTGGTTAGCTAATAAACTTT
TTCAAGCGATTCCTGGTTCAATGAAAGTTCTCCTTGTTGGAGATGCTGACCAGCTTCCTTCTGTGGGGCCAGGACAAATT
TTTGCGGATTTACTAAAAATTCCAGAAATTCCGTCAGTAAAATTGGATAAAATTTTTCGTCAAGGGGATGATTCTACCAT
TACTGATTTAGCTCACCATATCAAAGATGGGCAATTGCCAAGTGATTTCACGGCGAAAAAGCCTGACCGTTCATATTTTG
AGGTCAGTGCTAATTTTGTTCCTCAGATGGTTGAACAAATCGCAAGTGCATGGCAAAAAAGAGGGAATAATCCTTTTGAA
TTACAGATCTTAGCGCCTATGTATAAAGGAATGCCCGGAATTAATGCAATGAATGTTCTTTTACAAAATCTCTTTAACCC
ACTTAATGACCGACTTGAATTCGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTTCTTCATTTAGTAAATGATG
CTGAGGCCAATGTATTTAACGGAGATTTGGGACAAATCGTAGAATTGATTGCAGCAAAATATACTGACAGTAAACAAGAT
GAGTTGGTGATGGATTTTGATGGTCAAGAATTGACTTATCCAAGAGCGGAGTGGTATAAAATTACTCTGGCTTATGCTAT
GTCCATTCATAAATCTCAAGGTTCAGAGTTTTCCACAGTTATTGTGCCGATGGTTTCTTCGTATTCACGCATGTTAGAGC
GAAATTTGCTTTATACGGCAATTACAAGGGCTAAACAAAGTCTGATTTTACTTGGTGAAGAACGAGCTTTTGCACAAGCG
GTGGCGCGTGAAGGGGCGAATCGAAAGACCTATCTGATCGAGCGATTTATGGGAGAAAACCCAGCGGCTAAAAATCTGTC
AGTAGAAATTGTGAGTGAAAAAGTTACTGACAAAAAAGAAAGATCTAACAAAGAGAAGAAGCTTGCAACGCCAGTAGAAT
TACAAGGGCAAAATCATTCTGTCAGTAAAAAAATGCCAGCAAAAGTAGAAGAAATTTCTTTATTTGAAGATGAAGAAATT
GAAACACTGGATCAGGGAAGCTTGACAGAAGCACTTATTTTGTCAGGAAATTTTGACCCTTTAATTGGTTTAACTCAACA
AGACTTTGCAATCTTTAATAAATAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (146-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (577-646)

• AAA domain (AAA_30) (331-522)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.042	90.408	0.38