Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LL047_RS00560 Genome accession   NZ_CP086072
Coordinates   97681..98940 (-) Length   419 a.a.
NCBI ID   WP_010905110.1    Uniprot ID   Q9CJA3
Organism   Lactococcus lactis subsp. lactis strain EIP33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92681..103940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL047_RS00530 (LL047_00530) - 93253..93555 (-) 303 WP_003132256.1 hypothetical protein -
  LL047_RS00535 (LL047_00535) - 93557..93724 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  LL047_RS00540 (LL047_00540) rpmG 94291..94440 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LL047_RS00545 (LL047_00545) rpmF 94470..94643 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LL047_RS00550 (LL047_00550) - 95007..96788 (+) 1782 WP_010905108.1 heavy metal translocating P-type ATPase -
  LL047_RS00555 (LL047_00555) spo0J 96841..97626 (-) 786 WP_010905109.1 ParB/RepB/Spo0J family partition protein Regulator
  LL047_RS00560 (LL047_00560) rarA 97681..98940 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  LL047_RS00565 (LL047_00565) - 98984..99472 (-) 489 WP_010905111.1 GNAT family N-acetyltransferase -
  LL047_RS00570 (LL047_00570) - 99624..100091 (+) 468 WP_010905112.1 DUF3013 family protein -
  LL047_RS00575 (LL047_00575) - 100121..101674 (+) 1554 WP_010905113.1 ABC-F family ATP-binding cassette domain-containing protein -
  LL047_RS00580 (LL047_00580) - 101805..102089 (+) 285 WP_010905114.1 hypothetical protein -
  LL047_RS00585 (LL047_00585) - 102127..102615 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -
  LL047_RS00590 (LL047_00590) prmA 102633..103586 (+) 954 WP_010905116.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46781.10 Da        Isoelectric Point: 5.7588

>NTDB_id=540067 LL047_RS00560 WP_010905110.1 97681..98940(-) (rarA) [Lactococcus lactis subsp. lactis strain EIP33]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=540067 LL047_RS00560 WP_010905110.1 97681..98940(-) (rarA) [Lactococcus lactis subsp. lactis strain EIP33]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599