Detailed information NTG0540049

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: JQX68_RS19230
• Genome accession: NZ_CP070483
• Coordinates: 3786804..3787949 (+)
• Length: 381 a.a.
• NCBI ID: WP_017696253.1
• Uniprot ID: A0A0C3JF17
• Organism: Bacillus sp. LJBS06
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3781804..3792949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQX68_RS19210 (JQX68_19210)	-	3781819..3783099 (+)	1281	WP_147772663.1	pitrilysin family protein	-
JQX68_RS19215 (JQX68_19215)	-	3783096..3783797 (+)	702	WP_147772664.1	bacteriocin biosynthesis protein AlbG	-
JQX68_RS19220 (JQX68_19220)	-	3783803..3785179 (-)	1377	WP_147772665.1	YncE family protein	-
JQX68_RS19225 (JQX68_19225)	-	3785219..3786574 (-)	1356	WP_147772666.1	YncE family protein	-
JQX68_RS21905	-	3786571..3786801 (-)	231	WP_125121078.1	hypothetical protein	-
JQX68_RS19230 (JQX68_19230)	rapF	3786804..3787949 (+)	1146	WP_017696253.1	tetratricopeptide repeat protein	Regulator
JQX68_RS19235 (JQX68_19235)	-	3787933..3788052 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
JQX68_RS19240 (JQX68_19240)	-	3788168..3788582 (+)	415	Protein_3755	YbaK/EbsC family protein	-
JQX68_RS19245 (JQX68_19245)	speB	3788650..3789522 (-)	873	WP_003227545.1	agmatinase	-
JQX68_RS19250 (JQX68_19250)	speE	3789583..3790413 (-)	831	WP_003227543.1	spermidine synthase	-
JQX68_RS19255 (JQX68_19255)	-	3790615..3792690 (+)	2076	WP_205440383.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45593.24 Da
• Isoelectric Point: 5.0684

>NTDB_id=540049 JQX68_RS19230 WP_017696253.1 3786804..3787949(+) (rapF) [Bacillus sp. LJBS06]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=540049 JQX68_RS19230 WP_017696253.1 3786804..3787949(+) (rapF) [Bacillus sp. LJBS06]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGAATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTTGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

3D structure

• AlphaFold DB: A0A0C3JF17

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.801
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57