Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   JQX68_RS13905 Genome accession   NZ_CP070483
Coordinates   2724342..2726702 (-) Length   786 a.a.
NCBI ID   WP_147772307.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2719342..2731702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS13885 (JQX68_13885) - 2719415..2720971 (+) 1557 WP_205440318.1 SH3 domain-containing protein -
  JQX68_RS13890 (JQX68_13890) dtd 2720998..2721438 (-) 441 WP_040082299.1 D-aminoacyl-tRNA deacylase -
  JQX68_RS13895 (JQX68_13895) relA 2721451..2723655 (-) 2205 WP_003229747.1 GTP diphosphokinase -
  JQX68_RS13900 (JQX68_13900) - 2723824..2724336 (-) 513 WP_014477521.1 adenine phosphoribosyltransferase -
  JQX68_RS13905 (JQX68_13905) recJ 2724342..2726702 (-) 2361 WP_147772307.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  JQX68_RS13910 (JQX68_13910) - 2726769..2727092 (-) 324 WP_014664812.1 lipopolysaccharide assembly LapA domain-containing protein -
  JQX68_RS13915 (JQX68_13915) - 2727167..2727664 (-) 498 WP_014664813.1 cation:proton antiporter regulatory subunit -
  JQX68_RS13920 (JQX68_13920) secDF 2727822..2730035 (-) 2214 WP_014664814.1 protein translocase subunit SecDF -
  JQX68_RS13925 (JQX68_13925) comN 2730074..2730370 (-) 297 WP_014664815.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87992.67 Da        Isoelectric Point: 5.1334

>NTDB_id=540028 JQX68_RS13905 WP_147772307.1 2724342..2726702(-) (recJ) [Bacillus sp. LJBS06]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVERQGLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLKAENVPNLRSRLNEIADNTLTEEDFVPVQEVDLVCSVEDITVESITEMNMLSPFGMLN
PKPHVLVENAVLEDVRKIGANKTHVKMTIKNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTLLKTEGLRQEVQVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWPVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQVKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=540028 JQX68_RS13905 WP_147772307.1 2724342..2726702(-) (recJ) [Bacillus sp. LJBS06]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACCAGTACGTCAGTGATGCTTCACACGCTGCAAAAACT
ATCGGCTCAAGTTGATTTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTCTCTTTGATCATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTGGCGAAAGAACTC
GGGCTGGATGTCATTATTACAGATCATCATGAACCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACTTACCCGTTTAAAGAGCTTGCAGGGGTCGGAGTCGCGTTTAAGCTGGCCCATGCTTTATTGGGTGAAC
TTCCGGATGAACTGCTTGACCTGGCGGCAATCGGCACCATTGCTGACCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTCCGGCGGACAAACCGGCTCGGCTTAAAAGAACTGATTAAGCTGTCAGGCGGAGACAT
TGGAGAAGCGAACGAAGAAACTGTCGGATTTCAGCTCGCTCCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGACC
CAGCTGTTCATTTGCTCATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACGGCAAGGGCTCGATCAAACTGCAATTGT
CGTGGCAAAAGCCGGATGGAACCCGGGAGTCGTCGGGATTGTGGCCTCAAAGCTTGTGGACCGTTTCTATCGCCCTGCTA
TTGTGCTTGGCATTGATGAAGAAAAGGGGATCGCTAAAGGTTCGGCCCGAAGCATCAGGGGATTTAATTTATTTGAGAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCAGCGGGGATGACGCTGAAAGCCGAAAATGT
GCCGAATTTGCGAAGCAGGCTGAATGAAATAGCGGACAATACGCTTACGGAAGAGGATTTTGTTCCTGTACAGGAAGTCG
ACCTTGTCTGCAGCGTCGAGGACATTACAGTTGAAAGCATCACAGAAATGAACATGCTTTCTCCTTTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCAGTACTGGAAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT
GACGATCAAAAATGAGTCGTCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTCGAAGAAGGCATCGTACCTGGAT
CAAGAATTTCCATTGTCGGTGAGATGTCAATCAACGAATGGAACAATCGGAAAAAACCGCAGCTTATGATAAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGACGTGGGAAGATACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTAAAACTGAAGGCCTTCGTCAAGAAGTGCAGGTCATCA
GCTCAGAAGATCAAGCAAAGGCGTTTGACCTCGATGGTGCATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGAAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCGAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGATGTGAAAAAACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGCCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTTGTGAGCGGAGCAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGTGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

97.837

100

0.978