Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JQX68_RS09065 Genome accession   NZ_CP070483
Coordinates   1756343..1757122 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. LJBS06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751343..1762122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS09045 (JQX68_09045) trmFO 1752036..1753343 (+) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JQX68_RS09050 (JQX68_09050) xerC 1753411..1754325 (+) 915 WP_069149592.1 tyrosine recombinase XerC -
  JQX68_RS09055 (JQX68_09055) clpQ 1754338..1754883 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  JQX68_RS09060 (JQX68_09060) hslU 1754891..1756303 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  JQX68_RS09065 (JQX68_09065) codY 1756343..1757122 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JQX68_RS09070 (JQX68_09070) flgB 1757503..1757892 (+) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  JQX68_RS09075 (JQX68_09075) flgC 1757892..1758344 (+) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  JQX68_RS09080 (JQX68_09080) fliE 1758355..1758675 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  JQX68_RS09085 (JQX68_09085) fliF 1758721..1760331 (+) 1611 WP_040083177.1 flagellar basal-body MS-ring/collar protein FliF -
  JQX68_RS09090 (JQX68_09090) fliG 1760344..1761360 (+) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  JQX68_RS09095 (JQX68_09095) fliH 1761353..1762105 (+) 753 WP_071576928.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=540007 JQX68_RS09065 WP_003220850.1 1756343..1757122(+) (codY) [Bacillus sp. LJBS06]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=540007 JQX68_RS09065 WP_003220850.1 1756343..1757122(+) (codY) [Bacillus sp. LJBS06]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATACACTGCTTTCCCTGTTGAGAACAGAGACTTATTCCA
AGCTGGTTTAACGACAATTGTGCCGATCATCGGAGGAGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTCAATGATGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGTAAAGCTGTTGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCTAGTAAAATCGCTGACCGCGTCGGTATTACCC
GTTCGGTTATTGTGAACGCACTGAGAAAGCTGGAGAGTGCCGGCGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGTTAAACAACAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467