Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LKM46_RS30420 Genome accession   NZ_CP086016
Coordinates   6431310..6431834 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6426310..6436834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS30405 (LKM46_30420) aroB 6427426..6428532 (-) 1107 WP_033977028.1 3-dehydroquinate synthase -
  LKM46_RS30410 (LKM46_30425) aroK 6428582..6429100 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LKM46_RS30415 (LKM46_30430) pilQ 6429112..6431256 (-) 2145 WP_042170908.1 type 4a pilus secretin PilQ Machinery gene
  LKM46_RS30420 (LKM46_30435) comL/pilP 6431310..6431834 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LKM46_RS30425 (LKM46_30440) pilO 6431831..6432454 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LKM46_RS30430 (LKM46_30445) pilN 6432451..6433047 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LKM46_RS30435 (LKM46_30450) pilM 6433047..6434111 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LKM46_RS30440 (LKM46_30455) - 6434296..6436767 (+) 2472 WP_033977033.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=539877 LKM46_RS30420 WP_003095836.1 6431310..6431834(-) (comL/pilP) [Pseudomonas aeruginosa isolate KB-PA_3]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=539877 LKM46_RS30420 WP_003095836.1 6431310..6431834(-) (comL/pilP) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCTT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACTCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362