Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LLH04_RS28275 Genome accession   NZ_CP086010
Coordinates   6023052..6023576 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa isolate KB-PA_F19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6018052..6028576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH04_RS28260 (LLH04_28275) aroB 6019168..6020274 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  LLH04_RS28265 (LLH04_28280) aroK 6020324..6020842 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LLH04_RS28270 (LLH04_28285) pilQ 6020854..6022998 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  LLH04_RS28275 (LLH04_28290) comL/pilP 6023052..6023576 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LLH04_RS28280 (LLH04_28295) pilO 6023573..6024196 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LLH04_RS28285 (LLH04_28300) pilN 6024193..6024789 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LLH04_RS28290 (LLH04_28305) pilM 6024789..6025853 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LLH04_RS28295 (LLH04_28310) - 6026038..6028509 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=539773 LLH04_RS28275 WP_003095836.1 6023052..6023576(-) (comL/pilP) [Pseudomonas aeruginosa isolate KB-PA_F19]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=539773 LLH04_RS28275 WP_003095836.1 6023052..6023576(-) (comL/pilP) [Pseudomonas aeruginosa isolate KB-PA_F19]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362