Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GGS_RS07395 Genome accession   NC_018712
Coordinates   1508283..1509320 (-) Length   345 a.a.
NCBI ID   WP_015017242.1    Uniprot ID   A0A9X8T209
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503283..1514320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS07370 (GGS_1394) rbsC 1503305..1504246 (-) 942 WP_022554979.1 hypothetical protein -
  GGS_RS07375 (GGS_1395) - 1504248..1505726 (-) 1479 WP_015017241.1 sugar ABC transporter ATP-binding protein -
  GGS_RS07380 (GGS_1396) rbsD 1505742..1506140 (-) 399 WP_003051896.1 D-ribose pyranase -
  GGS_RS07385 (GGS_1397) rbsK 1506115..1507026 (-) 912 WP_003061715.1 ribokinase -
  GGS_RS07390 (GGS_1398) - 1507019..1508002 (-) 984 WP_003053684.1 LacI family DNA-binding transcriptional regulator -
  GGS_RS07395 (GGS_1399) sepM 1508283..1509320 (-) 1038 WP_015017242.1 SepM family pheromone-processing serine protease Regulator
  GGS_RS07400 (GGS_1400) coaD 1509307..1509798 (-) 492 WP_003051905.1 pantetheine-phosphate adenylyltransferase -
  GGS_RS07405 (GGS_1401) rsmD 1509788..1510327 (-) 540 WP_014612463.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GGS_RS07410 (GGS_1402) asnA 1510521..1511513 (-) 993 WP_003061055.1 aspartate--ammonia ligase -
  GGS_RS07415 (GGS_1403) arcC 1511839..1512789 (-) 951 WP_012767309.1 carbamate kinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37603.18 Da        Isoelectric Point: 9.4270

>NTDB_id=53969 GGS_RS07395 WP_015017242.1 1508283..1509320(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MKTIKKIKWWLISLIALVALLIVLFFPLPYYVEMPGGAYDIRSVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDISKDSTFKGTLNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSEPKSETGRIIKLKNGKNGIGIALTDHTKVNSAEKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKDGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVDKAVKKANPKAISNYEEAKRA
AKQLKTKMKIVPVTTVQDALAYLRQ

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=53969 GGS_RS07395 WP_015017242.1 1508283..1509320(-) (sepM) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAGCCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTTTTTTTCCC
TCTTCCTTATTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGATCTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAGTTGCTCTATGCTTGGCTAACCCCT
TTTACTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTAT
ATGTGTTAGATATTAGCAAGGATTCAACCTTTAAAGGTACTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAATAGCGAACCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGAGAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGCGCAGGCTTAATGTTT
ACATTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AGATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAGATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGATAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.594

100

0.716

Multiple sequence alignment