Detailed information NTG0539647

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LJC78_RS14040
• Genome accession: NZ_CP086007
• Coordinates: 2587474..2588739 (+)
• Length: 421 a.a.
• NCBI ID: WP_014480427.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. natto strain SCP010-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2582474..2593739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJC78_RS14020 (LJC78_14020)	yrrB	2583845..2584465 (-)	621	WP_206697897.1	tetratricopeptide repeat protein	-
LJC78_RS14025 (LJC78_14025)	mnmA	2584551..2585666 (-)	1116	WP_014480424.1	tRNA 2-thiouridine(34) synthase MnmA	-
LJC78_RS14030 (LJC78_14030)	iscSA	2585697..2586836 (-)	1140	WP_014480425.1	cysteine desulfurase family protein	-
LJC78_RS14035 (LJC78_14035)	cymR	2586855..2587271 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
LJC78_RS14040 (LJC78_14040)	rarA	2587474..2588739 (+)	1266	WP_014480427.1	replication-associated recombination protein A	Machinery gene
LJC78_RS14045 (LJC78_14045)	tcdA	2588779..2589543 (-)	765	WP_014480428.1	ThiF family adenylyltransferase	-
LJC78_RS14055 (LJC78_14055)	aspS	2589878..2591656 (-)	1779	WP_014480429.1	aspartate--tRNA ligase	-
LJC78_RS14060 (LJC78_14060)	hisS	2591670..2592944 (-)	1275	WP_014480430.1	histidine--tRNA ligase	-
LJC78_RS14065 (LJC78_14065)	yrzK	2593326..2593496 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46463.29 Da
• Isoelectric Point: 7.2043

>NTDB_id=539647 LJC78_RS14040 WP_014480427.1 2587474..2588739(+) (rarA) [Bacillus subtilis subsp. natto strain SCP010-1]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDSGWVEQQYLPDSLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=539647 LJC78_RS14040 WP_014480427.1 2587474..2588739(+) (rarA) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGGATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGATCTGATTAAACAGGCACTGGAACGC
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGTGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAGCGGTTGGGTCGAACAACAATACCTCCCTGATTCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACAGGAAAATTCGAATCCGCCTTAAAGCAGGTGTATGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	99.287	100	0.993