Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GGS_RS03695 Genome accession   NC_018712
Coordinates   729385..730251 (+) Length   288 a.a.
NCBI ID   WP_042357882.1    Uniprot ID   A0AB38Y3D2
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 724385..735251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS03670 (GGS_0702) atpD 725421..726827 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  GGS_RS03675 (GGS_0703) - 726840..727256 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  GGS_RS03680 (GGS_0704) - 727585..727821 (+) 237 WP_274047614.1 DUF1146 family protein -
  GGS_RS03685 (GGS_0705) murA 727886..729157 (+) 1272 WP_015016870.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GGS_RS03690 - 729161..729349 (+) 189 WP_003057490.1 DNA-directed RNA polymerase subunit beta -
  GGS_RS03695 (GGS_0706) endA 729385..730251 (+) 867 WP_042357882.1 DNA/RNA non-specific endonuclease Machinery gene
  GGS_RS03700 (GGS_0707) pheS 730534..731577 (+) 1044 WP_003061661.1 phenylalanine--tRNA ligase subunit alpha -
  GGS_RS03705 (GGS_0708) pheT 731787..734192 (+) 2406 WP_042357883.1 phenylalanine--tRNA ligase subunit beta -
  GGS_RS03710 (GGS_0709) - 734302..734679 (+) 378 WP_042357884.1 OsmC family protein -
  GGS_RS03715 (GGS_0710) - 734672..735058 (+) 387 WP_015016875.1 YbgA family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31888.90 Da        Isoelectric Point: 10.1381

>NTDB_id=53961 GGS_RS03695 WP_042357882.1 729385..730251(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEAYSEVPTEALSASVLTKSIKEQ
LGSNIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=53961 GGS_RS03695 WP_042357882.1 729385..730251(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGCCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCAATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGTGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGATCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTGTTAGCCAGTGGCAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGTTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.393

81.25

0.507
  endA Streptococcus pneumoniae D39

62.393

81.25

0.507
  endA Streptococcus pneumoniae R6

62.393

81.25

0.507
  endA Streptococcus pneumoniae TIGR4

62.393

81.25

0.507

Multiple sequence alignment