Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JRY11_RS05240 Genome accession   NZ_CP070382
Coordinates   977377..978315 (+) Length   312 a.a.
NCBI ID   WP_023188634.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 972377..983315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS05220 (JRY11_001051) - 973676..974302 (+) 627 WP_023188632.1 ABC transporter ATP-binding protein -
  JRY11_RS05225 (JRY11_001052) - 974459..974917 (+) 459 WP_023188633.1 hypothetical protein -
  JRY11_RS05230 (JRY11_001053) typA 975105..976937 (+) 1833 WP_025016832.1 translational GTPase TypA -
  JRY11_RS05235 (JRY11_001054) - 977038..977289 (+) 252 WP_004254583.1 DUF3165 family protein -
  JRY11_RS05240 (JRY11_001055) comYH 977377..978315 (+) 939 WP_023188634.1 class I SAM-dependent methyltransferase Machinery gene
  JRY11_RS05245 (JRY11_001056) - 978510..979697 (+) 1188 WP_023188635.1 acetate kinase -
  JRY11_RS05250 (JRY11_001057) - 979854..981041 (+) 1188 WP_023188636.1 acetate kinase -
  JRY11_RS05255 (JRY11_001058) - 981175..981627 (+) 453 WP_023188637.1 hypothetical protein -
  JRY11_RS05260 (JRY11_001059) pyrH 981712..982428 (+) 717 WP_004254608.1 UMP kinase -
  JRY11_RS05265 (JRY11_001060) frr 982641..983198 (+) 558 WP_004254618.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34750.85 Da        Isoelectric Point: 4.3281

>NTDB_id=539600 JRY11_RS05240 WP_023188634.1 977377..978315(+) (comYH) [Lactococcus lactis strain KF140]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNNEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=539600 JRY11_RS05240 WP_023188634.1 977377..978315(+) (comYH) [Lactococcus lactis strain KF140]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAATGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487