Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JVB21_RS07405 Genome accession   NZ_CP070381
Coordinates   1483502..1484290 (-) Length   262 a.a.
NCBI ID   WP_075525153.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478502..1489290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS07385 (JVB21_07385) gatB 1479404..1480837 (-) 1434 WP_205271801.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  JVB21_RS07390 (JVB21_07390) - 1480877..1481479 (-) 603 WP_205271802.1 NUDIX hydrolase -
  JVB21_RS07395 (JVB21_07395) gatA 1481483..1482943 (-) 1461 WP_205271803.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  JVB21_RS07400 (JVB21_07400) gatC 1482943..1483248 (-) 306 WP_205271804.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  JVB21_RS07405 (JVB21_07405) codY 1483502..1484290 (-) 789 WP_075525153.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JVB21_RS07410 (JVB21_07410) - 1484445..1485659 (-) 1215 WP_205271805.1 pyridoxal phosphate-dependent aminotransferase -
  JVB21_RS07415 (JVB21_07415) - 1485744..1487327 (-) 1584 WP_205271806.1 glycosyltransferase -
  JVB21_RS07420 (JVB21_07420) - 1487521..1487760 (-) 240 WP_075525150.1 hypothetical protein -
  JVB21_RS07425 (JVB21_07425) - 1487773..1487982 (-) 210 WP_075525149.1 hypothetical protein -
  JVB21_RS07430 (JVB21_07430) - 1488108..1488911 (-) 804 WP_205271807.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29197.60 Da        Isoelectric Point: 4.5357

>NTDB_id=539555 JVB21_RS07405 WP_075525153.1 1483502..1484290(-) (codY) [Lactococcus taiwanensis strain K_LL001]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNERVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDKPLAIFPEEVLENFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLILVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNSGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=539555 JVB21_RS07405 WP_075525153.1 1483502..1484290(-) (codY) [Lactococcus taiwanensis strain K_LL001]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGCGTGACCGATTTGCAACAGGAGCTTCC
ATACAATAGCATGACGGAACGCTTAGCAAATGTCATTGACTGTAATGCCTGCGTGATTAATACGAAAGGTGAGTTACTTG
GTTACTCACTTCCTTACAATACGAATAATGAACGTGTAGATCAATTTTTCTATGATCGTAAATTACCAGATGAATATGTT
CGTGCTGCGGTTCGTATCTACGACACTATGGCTAACGTACCTGTAGACAAACCTTTGGCAATCTTCCCAGAAGAAGTTTT
AGAAAACTTTCCTAAGGGTGTGACAACTTTGGCGCCTATTTATGGTTCAGGCATGCGTCTTGGAACCTTTATTATGTGGC
GTGAAGACGGAGAATTTACGGATGATGACCTTATTTTGGTCGAACTGGCTACCACTGTAATTGGGGTGCAACTTTCAAAC
CTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGATACCATGGCGACGATGGCGGTAAATACACTTTCTTACTCAGA
AATGAAAGCCGTGAAAGCCATTATTGAAGAACTTGATGGAGAAGAAGGCCACGTTATTGCCTCAGTCATTGCTGATAAAA
TCGGAATTACACGCTCAGTGATTGTTAATGCTTTACGCAAACTTGAATCTGCCGGTGTGATTGAATCTCGTTCACTTGGT
ATGAAAGGGACTTATCTGAAAGTCCTTAACTCAGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

97.328

100

0.973
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462