Detailed information NTG0539387

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: JWB57_RS09065
• Genome accession: NZ_CP070358
• Coordinates: 1794676..1795377 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1789676..1800377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JWB57_RS09035 (JWB57_11110)	-	1789983..1790426 (-)	444	WP_001246675.1	SRPBCC family protein	-
JWB57_RS09040 (JWB57_11115)	tadA	1790496..1790999 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
JWB57_RS09045 (JWB57_11120)	-	1791006..1792130 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
JWB57_RS09050 (JWB57_11125)	ung	1792127..1792840 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
JWB57_RS09055 (JWB57_11130)	-	1792891..1793487 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
JWB57_RS09060 (JWB57_11135)	gspK	1793717..1794676 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
JWB57_RS09065 (JWB57_11140)	xcpW	1794676..1795377 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
JWB57_RS09070 (JWB57_11145)	xcpV	1795377..1795757 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
JWB57_RS09075 (JWB57_11150)	-	1795747..1796301 (-)	555	WP_000841373.1	type II secretion system protein	-
JWB57_RS09080 (JWB57_11155)	-	1796311..1796919 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
JWB57_RS09085 (JWB57_11160)	-	1796957..1797730 (-)	774	WP_000497300.1	TatD family hydrolase	-
JWB57_RS09090 (JWB57_11165)	-	1797748..1798089 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
JWB57_RS09095 (JWB57_11170)	-	1798101..1799081 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
JWB57_RS09100 (JWB57_11175)	kdsB	1799093..1799854 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=539387 JWB57_RS09065 WP_000594579.1 1794676..1795377(-) (xcpW) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=539387 JWB57_RS09065 WP_000594579.1 1794676..1795377(-) (xcpW) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983