Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LK447_RS05005 Genome accession   NZ_CP085947
Coordinates   1032225..1033400 (-) Length   391 a.a.
NCBI ID   WP_000060245.1    Uniprot ID   B5Z6G8
Organism   Helicobacter pylori strain FDAARGOS_1563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1027225..1038400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK447_RS04970 (LK447_04970) - 1027544..1027858 (+) 315 WP_000868000.1 hypothetical protein -
  LK447_RS04975 (LK447_04975) - 1027836..1028603 (+) 768 WP_000602420.1 RNA polymerase sigma factor FliA -
  LK447_RS04980 (LK447_04980) fliM 1028596..1029660 (+) 1065 WP_000763571.1 flagellar motor switch protein FliM -
  LK447_RS04985 (LK447_04985) fliY 1029664..1030527 (+) 864 WP_001150701.1 flagellar motor switch protein FliY -
  LK447_RS04990 (LK447_04990) - 1030557..1031093 (+) 537 WP_000964064.1 YhcH/YjgK/YiaL family protein -
  LK447_RS04995 (LK447_04995) - 1031090..1031593 (+) 504 WP_000780237.1 DUF2147 domain-containing protein -
  LK447_RS05000 (LK447_05000) fur 1031613..1032065 (-) 453 WP_000824998.1 ferric iron uptake transcriptional regulator -
  LK447_RS05005 (LK447_05005) rarA 1032225..1033400 (-) 1176 WP_000060245.1 replication-associated recombination protein A Machinery gene
  LK447_RS05010 (LK447_05010) - 1033397..1033768 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  LK447_RS05015 (LK447_05015) - 1033778..1034644 (-) 867 WP_000045854.1 DnaJ family protein -
  LK447_RS05020 (LK447_05020) - 1034812..1036062 (+) 1251 WP_227985805.1 outer membrane family protein -
  LK447_RS05025 (LK447_05025) - 1036156..1036992 (-) 837 WP_000555777.1 5'-3' exonuclease -
  LK447_RS05030 (LK447_05030) - 1037248..1038144 (-) 897 WP_000697530.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43774.43 Da        Isoelectric Point: 8.9208

>NTDB_id=539301 LK447_RS05005 WP_000060245.1 1032225..1033400(-) (rarA) [Helicobacter pylori strain FDAARGOS_1563]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARITLSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=539301 LK447_RS05005 WP_000060245.1 1032225..1033400(-) (rarA) [Helicobacter pylori strain FDAARGOS_1563]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTGGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTATAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGTGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTACAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCATTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCACTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCCTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTACCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z6G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391