Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JVX94_RS06630 Genome accession   NZ_CP070345
Coordinates   1269057..1269836 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. PDNC022     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264057..1274836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS06600 (JVX94_06600) fliH 1264171..1264935 (-) 765 WP_205185009.1 flagellar assembly protein FliH -
  JVX94_RS06605 (JVX94_06605) fliG 1264928..1265944 (-) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  JVX94_RS06610 (JVX94_06610) fliF 1265956..1267548 (-) 1593 WP_095408476.1 flagellar basal-body MS-ring/collar protein FliF -
  JVX94_RS06615 (JVX94_06615) fliE 1267598..1267915 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  JVX94_RS06620 (JVX94_06620) flgC 1267927..1268379 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  JVX94_RS06625 (JVX94_06625) flgB 1268379..1268768 (-) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  JVX94_RS06630 (JVX94_06630) codY 1269057..1269836 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JVX94_RS06635 (JVX94_06635) hslU 1269871..1271271 (-) 1401 WP_144485184.1 HslU--HslV peptidase ATPase subunit -
  JVX94_RS06640 (JVX94_06640) hslV 1271288..1271833 (-) 546 WP_095408474.1 ATP-dependent protease subunit HslV -
  JVX94_RS06645 (JVX94_06645) xerC 1271848..1272765 (-) 918 WP_205185012.1 tyrosine recombinase XerC -
  JVX94_RS06650 (JVX94_06650) trmFO 1272828..1274132 (-) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=539281 JVX94_RS06630 WP_007499612.1 1269057..1269836(-) (codY) [Bacillus sp. PDNC022]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=539281 JVX94_RS06630 WP_007499612.1 1269057..1269836(-) (codY) [Bacillus sp. PDNC022]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTATTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471