Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LK450_RS08515 Genome accession   NZ_CP085939
Coordinates   1718888..1720159 (-) Length   423 a.a.
NCBI ID   WP_003030915.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1713888..1725159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS08485 (LK450_08485) - 1713972..1714739 (+) 768 WP_003030875.1 epoxyqueuosine reductase QueH -
  LK450_RS08490 (LK450_08490) - 1714926..1715564 (+) 639 WP_003026903.1 deoxynucleoside kinase -
  LK450_RS08495 (LK450_08495) - 1715629..1716288 (+) 660 WP_003030885.1 HD domain-containing protein -
  LK450_RS08500 (LK450_08500) - 1716374..1717725 (+) 1352 Protein_1644 IS3 family transposase -
  LK450_RS08505 (LK450_08505) - 1717804..1718319 (-) 516 WP_003026899.1 DUF308 domain-containing protein -
  LK450_RS08515 (LK450_08515) rarA 1718888..1720159 (-) 1272 WP_003030915.1 replication-associated recombination protein A Machinery gene
  LK450_RS08520 (LK450_08520) - 1720261..1720731 (+) 471 WP_003030904.1 DUF3013 family protein -
  LK450_RS08525 (LK450_08525) - 1720781..1721224 (+) 444 WP_003030923.1 NUDIX hydrolase -
  LK450_RS08530 (LK450_08530) - 1721221..1721700 (+) 480 WP_003030928.1 GNAT family N-acetyltransferase -
  LK450_RS08535 (LK450_08535) prmA 1721704..1722657 (+) 954 WP_003030897.1 50S ribosomal protein L11 methyltransferase -
  LK450_RS08540 (LK450_08540) - 1722658..1723398 (+) 741 WP_003030880.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LK450_RS08545 (LK450_08545) - 1723565..1723711 (+) 147 WP_003028899.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46866.41 Da        Isoelectric Point: 6.4250

>NTDB_id=539258 LK450_RS08515 WP_003030915.1 1718888..1720159(-) (rarA) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLINDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTQADNTGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARIIIANIV
IDLALSPKSNSAYVAMDKALSDLRQNGNLAIPRHLRDGHYVGSKELGNAQDYKYPHNYPGNWVKQDYLPEKIKYADYFIP
NENGKYERALGMTKNKIDQLKNN

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=539258 LK450_RS08515 WP_003030915.1 1718888..1720159(-) (rarA) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGCCAGACAATTTAGCGATTCGCATGAGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTTGGCGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTATATGGTCCGCCAGGGATTGGCAAGACTT
CAATTGCTTCGGCTATTGCCGGAACTACTAAATTTGCTTTTCGGACCTTTAATGCTACTGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCGGAAGAAGCCAAATTCTCTGGTGGTTTGGTGCTGCTGTTAGACGAGATTCATCGCTTGGACAAGACCAA
ACAGGACTTCCTCCTACCTCTCTTGGAAAACGGTCTGGTCATCATGATTGGCGCCACAACAGAAAATCCCTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGAGTACAAATTTTCGAGTTGGAACCTCTGATAAATGATGATATTAAACAAGCCATCCAA
ACAGCCCTGACGGACACCGAACGAGGCTTTGACTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTGCCACTTC
CACGAATGGAGATCTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTTCTCTCTACTCAAGCAGATAATACAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTGCAAAAGAGCTACATCACTATGGACAAGGACGGAGACGGGCACTAT
GACGTTCTGTCCGCCTTACAGAAGTCTATTCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCCGGAGACCTTCCCAGTCTTGCACGACGTCTGACGGTCATCGCTTATGAGGACATTGGTCTGGCAAACCCTGATGCTC
AGATTCATACGGTGACTGCACTTGAAGCCGCTCAGAAAATCGGATTCCCAGAAGCTCGCATCATCATTGCCAACATTGTC
ATTGACCTAGCGCTCTCTCCTAAGTCCAACTCGGCCTACGTAGCCATGGACAAGGCGCTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCCCGTCATCTACGAGACGGTCATTACGTCGGAAGCAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAACTGGGTGAAACAAGATTATCTTCCTGAAAAAATAAAATATGCCGATTATTTCATTCCA
AATGAAAATGGAAAGTATGAACGAGCCCTTGGCATGACTAAAAATAAGATTGATCAATTAAAAAACAACTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

98.818

0.586