Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   LK450_RS05930 Genome accession   NZ_CP085939
Coordinates   1225284..1227638 (+) Length   784 a.a.
NCBI ID   WP_003032958.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1220284..1232638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS05910 (LK450_05910) - 1222458..1223006 (-) 549 WP_003033009.1 CvpA family protein -
  LK450_RS05915 (LK450_05915) - 1223003..1223308 (-) 306 WP_003026418.1 hypothetical protein -
  LK450_RS05920 (LK450_05920) rnhC 1223394..1224284 (+) 891 WP_003032992.1 ribonuclease HIII -
  LK450_RS05925 (LK450_05925) lepB 1224288..1224902 (+) 615 WP_003033014.1 signal peptidase I -
  LK450_RS05930 (LK450_05930) recD/recD2/recDB 1225284..1227638 (+) 2355 WP_003032958.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LK450_RS05935 (LK450_05935) dinB 1227675..1228742 (-) 1068 WP_003032972.1 DNA polymerase IV -
  LK450_RS05940 (LK450_05940) pflB 1228991..1231306 (+) 2316 WP_003032996.1 formate C-acetyltransferase -
  LK450_RS05945 (LK450_05945) - 1231407..1232183 (+) 777 WP_003033010.1 threonine/serine exporter family protein -
  LK450_RS05950 (LK450_05950) - 1232187..1232636 (+) 450 WP_003027068.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88295.45 Da        Isoelectric Point: 4.6522

>NTDB_id=539222 LK450_RS05930 WP_003032958.1 1225284..1227638(+) (recD/recD2/recDB) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNAIDKVLAEPEKLKDIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLIQSMEKGDTYLEAK
ELLEGTIELLESSRQIELDSSSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGIRSSLLRILEKGKQNKFEPKKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSHDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPTDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQLVFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLINDEKVIHTSVDNLETTVENYVLSEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=539222 LK450_RS05930 WP_003032958.1 1225284..1227638(+) (recD/recD2/recDB) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACGGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGACAACGCGATTGATAAAGTCTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGTCTTTCTGCTA
AAAACCGTGAAGCCTTTCTCACAAAACTAAGACAAAATTATGGCACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGT
ATCCCGAACAAGCTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACCGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAATCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCTAAG
GAATTGCTAGAGGGCACGATTGAGCTCCTCGAAAGTTCTCGTCAGATTGAGTTAGACTCAAGTTCTGTTGCGGATGAGCT
GGCACATTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGCAGCAGTCTCCTACGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGAAAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGAATG
GGTTGGATTTGCGTAAATCTCACGATTTGCCTATCCTTCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGATTCCACTATCGTTACCTTAGC
CAGTCAGATTCAAAAAGGCATCCTGCCAACTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTACTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACGGATTGCCAATACCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGCA
ATGTGTTCAACGGTGACTTGGGTTATATCACCGATTTGCTGCCAGCAAAATATACGGACTCTAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTGATCAATGATGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGAAAACTATGTCTTGTCTGAGGAAAATTTCTTGAAAATTAACCCCATGATTGGAATAA
CGGATGAAGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(333-528)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.499

95.281

0.395